EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
Comparison · Analytics
SimInf vs watina
A side-by-side editorial comparison of SimInf and watina — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
SimInf vs watina: at a glance
What is SimInf?
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
What is watina?
A groundwater database client that has started doing the domain analysis too
watina is the R interface to the Watina groundwater monitoring database, and its history is mostly about making data retrieval correct: filter depths guessed conservatively when missing, spatial masking, aggregation methods per observation well, and a long series of fixes to keep the lazy database queries working across dbplyr versions. The most recent release moves past retrieval into interpretation, adding ionic ratio calculation and a Van Wirdum diagram to plot chemistry data.
SimInf vs watina: editorial side-by-side
SimInf
0.0ANALYTICS
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
◆ Current state
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
◆ Where it's heading
The package has been moving from simulation toward inference for several releases. The 9.x line built the input side — utilities for cleaning raw individual event data, variables and enumeration constants in the model parser — and 10.0.0 closed the loop by making the simulator fittable to data through PMCMC. The version number was incremented precisely because that required breaking the particle filter interface.
◆ Prediction
Fitting machinery this new usually needs a second pass on usability, so the next releases most likely focus on diagnostics and documentation around PMCMC rather than on the simulation core, which has been stable across the whole 9.x and 10.x history.
watina
0.0ANALYTICS
A groundwater database client that has started doing the domain analysis too
◆ Current state
watina is the R interface to the Watina groundwater monitoring database, and its history is mostly about making data retrieval correct: filter depths guessed conservatively when missing, spatial masking, aggregation methods per observation well, and a long series of fixes to keep the lazy database queries working across dbplyr versions. The most recent release moves past retrieval into interpretation, adding ionic ratio calculation and a Van Wirdum diagram to plot chemistry data.
◆ Where it's heading
The package is drifting from a database client toward a domain toolkit. Early releases fought the data layer — connection handling moved to inbodb, sorting semantics changed, defunct dbplyr calls worked around. Recent work assumes retrieval is solved and adds hydrochemical analysis on top, along with defensive handling for the physically impossible inputs that analysis exposes, such as zero conductivity in the warehouse.
◆ Prediction
Expect further chemistry analysis and plotting helpers rather than new retrieval functions, since that is where the newest release invested and where the accompanying vignette points.
Alternatives to SimInf and watina
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either SimInf or watina.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
See all SimInf alternatives → · See all watina alternatives →
Recent activity from SimInf and watina
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agowatinaIonic ratios and Van Wirdum diagrams for chemistry data
- 9mo agoSimInfAvoid memcpy on zero-length continuous state vector
- 9mo agoSimInfPMCMC fitting arrives; particle filter interface redesigned ⚡
- 2y agoSimInfDocumentation link anchors; parser dependency fix
- 2y agoSimInfModel parser gains variables and enumeration constants
- 2y agoSimInfindividual_events() added for raw event data cleaning
- 2y agowatinaKSgeneral moved to Suggests to survive CRAN removal
- 3y agoSimInfConfigure script uses R to locate the compiler
- 5y agowatinaDataframe input restored after a defunct dbplyr call
- 5y agowatinadbplyr 2.0 compatibility drops the need for a forked dependency
- 5y agowatinaSpatial clustering of wells and richer location attributes
- 6y agowatinaSoil surface calculation fixed after a select() dropped the variable
Frequently asked questions
What is the difference between SimInf and watina?
Both compete on the same themes — r-package — within Analytics. SimInf and watina are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is SimInf better than watina?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. SimInf and watina are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to SimInf?
Top SimInf alternatives in Analytics are ranked by recent ship velocity. Browse the "SimInf alternatives" section above for the current picks, or visit /alternatives/siminf-r for the full list with editorial commentary on each.
What are the best alternatives to watina?
Top watina alternatives in Analytics are ranked by recent ship velocity. Browse the "watina alternatives" section above for the current picks, or visit /alternatives/watina-r for the full list with editorial commentary on each.