paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
parallelDist vs SimInf
A side-by-side editorial comparison of parallelDist and SimInf — release velocity, themes, recent moves, and the top alternatives to consider.
parallelDist vs SimInf: at a glance
What is parallelDist?
parallelDist is in pure preservation mode — one build fix every few years.
parallelDist computes distance matrices across threads in C++ via RcppParallel and Armadillo. The feature set has been settled since 0.2.3 in 2018, which added hamming distance and cosine similarity; everything after that is compatibility work. The most recent release, 0.2.7, exists only to drop a C++11 pin that newer Armadillo versions no longer tolerate.
What is SimInf?
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
parallelDist vs SimInf: editorial side-by-side
parallelDist
0.0ANALYTICS
parallelDist is in pure preservation mode — one build fix every few years.
◆ Current state
parallelDist computes distance matrices across threads in C++ via RcppParallel and Armadillo. The feature set has been settled since 0.2.3 in 2018, which added hamming distance and cosine similarity; everything after that is compatibility work. The most recent release, 0.2.7, exists only to drop a C++11 pin that newer Armadillo versions no longer tolerate.
◆ Where it's heading
The package is being kept installable, not developed. The three most recent releases are a toolchain pin removal, a DESCRIPTION field removal, and a coercion change inherited from proxy — none originate from user-facing intent. Gaps of three to four years between releases are the norm now, and each one is triggered by something upstream breaking rather than by a roadmap.
◆ Prediction
The next release will almost certainly be another compatibility fix timed to whatever Armadillo, Rcpp or CRAN check policy changes next. Nothing in the entries points to new distance measures or API work.
SimInf
0.0ANALYTICS
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
◆ Current state
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
◆ Where it's heading
The package has been moving from simulation toward inference for several releases. The 9.x line built the input side — utilities for cleaning raw individual event data, variables and enumeration constants in the model parser — and 10.0.0 closed the loop by making the simulator fittable to data through PMCMC. The version number was incremented precisely because that required breaking the particle filter interface.
◆ Prediction
Fitting machinery this new usually needs a second pass on usability, so the next releases most likely focus on diagnostics and documentation around PMCMC rather than on the simulation core, which has been stable across the whole 9.x and 10.x history.
Alternatives to parallelDist and SimInf
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either parallelDist or SimInf.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all parallelDist alternatives → · See all SimInf alternatives →
Recent activity from parallelDist and SimInf
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 9mo agoSimInfAvoid memcpy on zero-length continuous state vector
- 9mo agoSimInfPMCMC fitting arrives; particle filter interface redesigned ⚡
- 10mo agoparallelDistparallelDist 0.2.7 drops the C++11 pin for newer Armadillo
- 2y agoSimInfDocumentation link anchors; parser dependency fix
- 2y agoSimInfModel parser gains variables and enumeration constants
- 2y agoSimInfindividual_events() added for raw event data cleaning
- 3y agoSimInfConfigure script uses R to locate the compiler
- 4y agoparallelDistparallelDist 0.2.6: LazyData removed, vignette font swapped
- 4y agoparallelDistparallelDist 0.2.5 changes cosine distance to 1-x
- 7y agoparallelDistparallelDist 0.2.4 fixes the Solaris build
- 7y agoparallelDistparallelDist 0.2.3 adds hamming and cosine measures
- 7y agoparallelDistparallelDist 0.2.2
Frequently asked questions
What is the difference between parallelDist and SimInf?
They serve adjacent needs but don't currently overlap on shipped themes. parallelDist and SimInf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is parallelDist better than SimInf?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. parallelDist and SimInf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to parallelDist?
Top parallelDist alternatives in Analytics are ranked by recent ship velocity. Browse the "parallelDist alternatives" section above for the current picks, or visit /alternatives/paralleldist for the full list with editorial commentary on each.
What are the best alternatives to SimInf?
Top SimInf alternatives in Analytics are ranked by recent ship velocity. Browse the "SimInf alternatives" section above for the current picks, or visit /alternatives/siminf-r for the full list with editorial commentary on each.