paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
geodist vs SimInf
A side-by-side editorial comparison of geodist and SimInf — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
geodist vs SimInf: at a glance
What is geodist?
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
geodist computes geodesic distances between coordinate pairs in C with no dependencies, offering several measures that trade accuracy for speed — including a 'cheap' approximation used by default. The API is small and largely finished; 0.1.0 added geodist_min() for nearest-match lookups and 0.1.1 is a compiler warning fix.
What is SimInf?
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
geodist vs SimInf: editorial side-by-side
geodist
0.0ANALYTICS
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
◆ Current state
geodist computes geodesic distances between coordinate pairs in C with no dependencies, offering several measures that trade accuracy for speed — including a 'cheap' approximation used by default. The API is small and largely finished; 0.1.0 added geodist_min() for nearest-match lookups and 0.1.1 is a compiler warning fix.
◆ Where it's heading
Development has been about making the speed-accuracy trade visible rather than hiding it. The 0.0.6 release added messages telling users to pick a different measure once the default cheap approximation is applied beyond 100km, where its error stops being negligible. Around that, the work is input handling — tibble support, better lon/lat column matching, vector inputs — and hardening the C code. It is a package that treats being small and correct as the feature.
◆ Prediction
Expect continued low-frequency maintenance: compiler warnings and geodesic source updates account for three of the last six releases, and the function surface has grown by only two entries in five years.
SimInf
0.0ANALYTICS
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
◆ Current state
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
◆ Where it's heading
The package has been moving from simulation toward inference for several releases. The 9.x line built the input side — utilities for cleaning raw individual event data, variables and enumeration constants in the model parser — and 10.0.0 closed the loop by making the simulator fittable to data through PMCMC. The version number was incremented precisely because that required breaking the particle filter interface.
◆ Prediction
Fitting machinery this new usually needs a second pass on usability, so the next releases most likely focus on diagnostics and documentation around PMCMC rather than on the simulation core, which has been stable across the whole 9.x and 10.x history.
Alternatives to geodist and SimInf
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either geodist or SimInf.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
protr
protr's feature set is finished; the work now is surviving Bioconductor's churn.
See all geodist alternatives → · See all SimInf alternatives →
Recent activity from geodist and SimInf
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 9mo agoSimInfAvoid memcpy on zero-length continuous state vector
- 9mo agoSimInfPMCMC fitting arrives; particle filter interface redesigned ⚡
- 1y agogeodistgeodist 0.1.1 clears a clang warning in geodesic.c
- 2y agoSimInfDocumentation link anchors; parser dependency fix
- 2y agogeodistgeodist 0.1.0 adds geodist_min() for nearest matches
- 2y agoSimInfModel parser gains variables and enumeration constants
- 2y agoSimInfindividual_events() added for raw event data cleaning
- 3y agoSimInfConfigure script uses R to locate the compiler
- 3y agogeodistgeodist 0.0.8 updates geodesic source, fixes clang warnings
- 5y agogeodistgeodist 0.0.7 improves lon/lat column matching and tibbles
- 5y agogeodistgeodist 0.0.6 warns when cheap distances exceed 100km
- 6y agogeodistgeodist 0.0.4 adds geodist_vec() for vector inputs
Frequently asked questions
What is the difference between geodist and SimInf?
Both compete on the same themes — r-package — within Analytics. geodist and SimInf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is geodist better than SimInf?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. geodist and SimInf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to geodist?
Top geodist alternatives in Analytics are ranked by recent ship velocity. Browse the "geodist alternatives" section above for the current picks, or visit /alternatives/geodist-r for the full list with editorial commentary on each.
What are the best alternatives to SimInf?
Top SimInf alternatives in Analytics are ranked by recent ship velocity. Browse the "SimInf alternatives" section above for the current picks, or visit /alternatives/siminf-r for the full list with editorial commentary on each.