paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
treespace vs watina
A side-by-side editorial comparison of treespace and watina — release velocity, themes, recent moves, and the top alternatives to consider.
treespace vs watina: at a glance
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
What is watina?
A groundwater database client that has started doing the domain analysis too
watina is the R interface to the Watina groundwater monitoring database, and its history is mostly about making data retrieval correct: filter depths guessed conservatively when missing, spatial masking, aggregation methods per observation well, and a long series of fixes to keep the lazy database queries working across dbplyr versions. The most recent release moves past retrieval into interpretation, adding ionic ratio calculation and a Van Wirdum diagram to plot chemistry data.
treespace vs watina: editorial side-by-side
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
watina
0.0ANALYTICS
A groundwater database client that has started doing the domain analysis too
◆ Current state
watina is the R interface to the Watina groundwater monitoring database, and its history is mostly about making data retrieval correct: filter depths guessed conservatively when missing, spatial masking, aggregation methods per observation well, and a long series of fixes to keep the lazy database queries working across dbplyr versions. The most recent release moves past retrieval into interpretation, adding ionic ratio calculation and a Van Wirdum diagram to plot chemistry data.
◆ Where it's heading
The package is drifting from a database client toward a domain toolkit. Early releases fought the data layer — connection handling moved to inbodb, sorting semantics changed, defunct dbplyr calls worked around. Recent work assumes retrieval is solved and adds hydrochemical analysis on top, along with defensive handling for the physically impossible inputs that analysis exposes, such as zero conductivity in the warehouse.
◆ Prediction
Expect further chemistry analysis and plotting helpers rather than new retrieval functions, since that is where the newest release invested and where the accompanying vignette points.
Alternatives to treespace and watina
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either treespace or watina.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all treespace alternatives → · See all watina alternatives →
Recent activity from treespace and watina
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agowatinaIonic ratios and Van Wirdum diagrams for chemistry data
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 2y agowatinaKSgeneral moved to Suggests to survive CRAN removal
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 5y agowatinaDataframe input restored after a defunct dbplyr call
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agowatinadbplyr 2.0 compatibility drops the need for a forked dependency
- 5y agowatinaSpatial clustering of wells and richer location attributes
- 5y agotreespacetreespace corrects tip label handling in transmission distances
- 6y agowatinaSoil surface calculation fixed after a select() dropped the variable
Frequently asked questions
What is the difference between treespace and watina?
They serve adjacent needs but don't currently overlap on shipped themes. treespace and watina are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is treespace better than watina?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. treespace and watina are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.
What are the best alternatives to watina?
Top watina alternatives in Analytics are ranked by recent ship velocity. Browse the "watina alternatives" section above for the current picks, or visit /alternatives/watina-r for the full list with editorial commentary on each.