paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
SimInf vs TAF
A side-by-side editorial comparison of SimInf and TAF — release velocity, themes, recent moves, and the top alternatives to consider.
SimInf vs TAF: at a glance
What is SimInf?
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
What is TAF?
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
TAF is the R tooling behind the ICES Transparent Assessment Framework, which standardizes how fish stock assessments are laid out, sourced and rerun. The 4.3.0 release is the largest in years, adding roughly ten functions covering dependency installation and analysis, software version checks, directory inspection and README drafting. The package has carried zero non-base dependencies since 4.0.0, and the new work is careful not to break that.
SimInf vs TAF: editorial side-by-side
SimInf
0.0ANALYTICS
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
◆ Current state
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
◆ Where it's heading
The package has been moving from simulation toward inference for several releases. The 9.x line built the input side — utilities for cleaning raw individual event data, variables and enumeration constants in the model parser — and 10.0.0 closed the loop by making the simulator fittable to data through PMCMC. The version number was incremented precisely because that required breaking the particle filter interface.
◆ Prediction
Fitting machinery this new usually needs a second pass on usability, so the next releases most likely focus on diagnostics and documentation around PMCMC rather than on the simulation core, which has been stable across the whole 9.x and 10.x history.
TAF
0.0ANALYTICS
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
◆ Current state
TAF is the R tooling behind the ICES Transparent Assessment Framework, which standardizes how fish stock assessments are laid out, sourced and rerun. The 4.3.0 release is the largest in years, adding roughly ten functions covering dependency installation and analysis, software version checks, directory inspection and README drafting. The package has carried zero non-base dependencies since 4.0.0, and the new work is careful not to break that.
◆ Where it's heading
The arc runs from analysis runner to project toolkit. Early 3.x releases built out the bootstrap and metadata machinery; 4.0.0 renamed the package and stripped every external dependency; 4.2.0 cleaned up vocabulary that confused users. 4.3.0 turns outward to the people running assessments — install.deps(), pdeps() and check.software() address reproducing someone else's environment, while draft.readme(), taf.example() and dir.tree() address understanding an unfamiliar project.
◆ Prediction
Expect the follow-up work to harden the new dependency functions rather than add more surface, since 4.3.1 arrived immediately to fix wide2long() compatibility with older R and that batch of ten functions has had little field exposure.
Alternatives to SimInf and TAF
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either SimInf or TAF.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
Recent activity from SimInf and TAF
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 9mo agoSimInfAvoid memcpy on zero-length continuous state vector
- 9mo agoSimInfPMCMC fitting arrives; particle filter interface redesigned ⚡
- 10mo agoTAFTAF 4.3.1 reworks wide2long() for older R
- 10mo agoTAFTAF 4.3.0 adds dependency and project-scaffolding tooling
- 2y agoSimInfDocumentation link anchors; parser dependency fix
- 2y agoSimInfModel parser gains variables and enumeration constants
- 2y agoSimInfindividual_events() added for raw event data cleaning
- 3y agoTAFTAF 4.2.0 renames 'bootstrap' to 'boot', keeps back-compat
- 3y agoTAFTAF 4.1.0 adds taf2html() and dot.case function aliases
- 3y agoSimInfConfigure script uses R to locate the compiler
- 5y agoTAFTAF 4.0.0 refocuses on ICES and drops every external dependency ⚡
- 5y agoTAFTAF 3.6.0 adds metadata tooling and drops the bibtex dependency
Frequently asked questions
What is the difference between SimInf and TAF?
They serve adjacent needs but don't currently overlap on shipped themes. SimInf and TAF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is SimInf better than TAF?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. SimInf and TAF are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to SimInf?
Top SimInf alternatives in Analytics are ranked by recent ship velocity. Browse the "SimInf alternatives" section above for the current picks, or visit /alternatives/siminf-r for the full list with editorial commentary on each.
What are the best alternatives to TAF?
Top TAF alternatives in Analytics are ranked by recent ship velocity. Browse the "TAF alternatives" section above for the current picks, or visit /alternatives/taf-r for the full list with editorial commentary on each.