paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
protr vs tidytab
A side-by-side editorial comparison of protr and tidytab — release velocity, themes, recent moves, and the top alternatives to consider.
protr vs tidytab: at a glance
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
What is tidytab?
A young tabulation helper whose first releases are all dependency modernisation
tidytab is a small R package for tidyverse-style tabulation, three releases into its public life. Nothing so far has added functionality: 0.2.0 fixed a cumulative-percentage calculation and moved to the base R pipe, and 0.3.0 swapped a retired purrr function for tidyr::expand_grid. The one substantive user-facing item in the history is the cumulative percentage fix.
protr vs tidytab: editorial side-by-side
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
tidytab
0.0ANALYTICS
A young tabulation helper whose first releases are all dependency modernisation
◆ Current state
tidytab is a small R package for tidyverse-style tabulation, three releases into its public life. Nothing so far has added functionality: 0.2.0 fixed a cumulative-percentage calculation and moved to the base R pipe, and 0.3.0 swapped a retired purrr function for tidyr::expand_grid. The one substantive user-facing item in the history is the cumulative percentage fix.
◆ Where it's heading
The package is being brought up to current tidyverse conventions by a wave of first-time contributors — six of them in 0.2.0 alone — rather than developed by a sustained maintainer effort. That makes the near-term direction predictable and narrow: retire deprecated idioms, keep CRAN checks clean. There is not yet enough history to say what the package intends to become.
◆ Prediction
With deprecated tidyselect and purrr usage now cleared, the remaining work of this kind is thin, so the next release will show whether the contributor interest converts into new tabulation features or the package settles at its current surface.
Alternatives to protr and tidytab
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either protr or tidytab.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all protr alternatives → · See all tidytab alternatives →
Recent activity from protr and tidytab
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 7mo agotidytabpurrr::cross2() replaced with tidyr::expand_grid()
- 8mo agotidytabCumulative percentage fixed; base pipe replaces magrittr
- 9mo agotidytabNEWS.md added to track changes
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
Frequently asked questions
What is the difference between protr and tidytab?
They serve adjacent needs but don't currently overlap on shipped themes. protr and tidytab are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is protr better than tidytab?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. protr and tidytab are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.
What are the best alternatives to tidytab?
Top tidytab alternatives in Analytics are ranked by recent ship velocity. Browse the "tidytab alternatives" section above for the current picks, or visit /alternatives/tidytab-r for the full list with editorial commentary on each.