tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
Comparison · Analytics
errors vs protr
A side-by-side editorial comparison of errors and protr — release velocity, themes, recent moves, and the top alternatives to consider.
errors vs protr: at a glance
What is errors?
errors keeps making uncertainty print the way each scientific field expects.
errors attaches uncertainty to numeric vectors and propagates it automatically through arithmetic, as part of the r-quantities family alongside units. The propagation core is settled; recent releases concentrate on presentation and integration — PDG rounding rules in 0.4.2, decimal support in parenthesis notation in 0.4.3, and ggplot2 deprecation tracking in 0.4.1 and 0.4.4.
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
errors vs protr: editorial side-by-side
errors
0.0ANALYTICS
errors keeps making uncertainty print the way each scientific field expects.
◆ Current state
errors attaches uncertainty to numeric vectors and propagates it automatically through arithmetic, as part of the r-quantities family alongside units. The propagation core is settled; recent releases concentrate on presentation and integration — PDG rounding rules in 0.4.2, decimal support in parenthesis notation in 0.4.3, and ggplot2 deprecation tracking in 0.4.1 and 0.4.4.
◆ Where it's heading
Two threads run through this history. One is formatting convergence: uncertainty has field-specific conventions, and the package has been absorbing them one contributed pull request at a time rather than imposing a single style. The other is keeping the errors class first-class everywhere R users work — vctrs methods for dplyr 1.0, a geom_errors() layer for ggplot2, missing-value and duplicate handling. Both are integration work, which is what a type-extension package mostly is.
◆ Prediction
Expect further formatting conventions to arrive as contributions, following PDG rounding and the decimals option, plus continued upkeep against ggplot2 aesthetic deprecations that have forced two of the last four releases.
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
Alternatives to errors and protr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either errors or protr.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
ggmagnify
A single-purpose ggplot2 inset tool, refining the same three arguments.
symengine
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
gtfstools
gtfstools stopped guarding its own object model and started accepting everyone else's.
quantities
The glue package that makes R carry units and uncertainty through the same calculation.
See all errors alternatives → · See all protr alternatives →
Recent activity from errors and protr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoerrorserrors 0.4.4 replaces deprecated geom_errorbarh()
- 1y agoerrorserrors 0.4.3 supports decimals in parenthesis notation
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoerrorserrors 0.4.2 adds PDG rounding rules
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoerrorserrors 0.4.1 handles missing values, fixes na.rm
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 3y agoerrorserrors 0.4.0 adds geom_errors() for automatic errorbars
- 5y agoerrorserrors 0.3.6
Frequently asked questions
What is the difference between errors and protr?
They serve adjacent needs but don't currently overlap on shipped themes. errors and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is errors better than protr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. errors and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to errors?
Top errors alternatives in Analytics are ranked by recent ship velocity. Browse the "errors alternatives" section above for the current picks, or visit /alternatives/errors-r for the full list with editorial commentary on each.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.