qqman
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
Comparison · Analytics
protr vs symengine
A side-by-side editorial comparison of protr and symengine — release velocity, themes, recent moves, and the top alternatives to consider.
protr vs symengine: at a glance
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
What is symengine?
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
symengine gives R access to the SymEngine computer algebra core for symbolic expressions, matrices and sets. The tracked feed carries the upstream C++ library's releases rather than R-binding changes, so what shows here is core work: parser fixes, locale-independent double parsing, an SOVERSION bump and matrix transpose corrections. Feature growth in the core has slowed considerably since the 0.9 and 0.10 releases.
protr vs symengine: editorial side-by-side
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
symengine
0.0ANALYTICS
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
◆ Current state
symengine gives R access to the SymEngine computer algebra core for symbolic expressions, matrices and sets. The tracked feed carries the upstream C++ library's releases rather than R-binding changes, so what shows here is core work: parser fixes, locale-independent double parsing, an SOVERSION bump and matrix transpose corrections. Feature growth in the core has slowed considerably since the 0.9 and 0.10 releases.
◆ Where it's heading
The upstream core has moved from adding capability — serialization, a first simplify(), set types, matrix expressions, LLVM support — toward maintenance: build fixes, dependency support such as Flint3, and correctness patches. For R users the practical consequence is that new symbolic features arrive only as fast as the binding exposes them, which this feed does not report on.
◆ Prediction
Expect further upstream maintenance releases tracking LLVM and Flint versions; nothing in these notes signals a new capability push.
Alternatives to protr and symengine
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either protr or symengine.
constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
See all protr alternatives → · See all symengine alternatives →
Recent activity from protr and symengine
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agosymengineLocale-independent double parsing and matrix transpose fix
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agosymengineFlint3 support and SBML printing fixes
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 3y agosymengineBuild fixes only, no functional change
- 3y agosymengineMatrix expressions, Intersection class and LLVM 16 support
- 4y agosymengineAdds serialization and a first simplify() implementation
- 4y agosymengineFixes MSVC2017 compilation failure
Frequently asked questions
What is the difference between protr and symengine?
They serve adjacent needs but don't currently overlap on shipped themes. protr and symengine are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is protr better than symengine?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. protr and symengine are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.
What are the best alternatives to symengine?
Top symengine alternatives in Analytics are ranked by recent ship velocity. Browse the "symengine alternatives" section above for the current picks, or visit /alternatives/symengine-r for the full list with editorial commentary on each.