qqman
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
Comparison · Analytics
protr vs tern.rbmi
A side-by-side editorial comparison of protr and tern.rbmi — release velocity, themes, recent moves, and the top alternatives to consider.
protr vs tern.rbmi: at a glance
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
What is tern.rbmi?
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
tern.rbmi renders the output of {rbmi} reference-based multiple imputation analyses into tern tables for clinical reporting. Its three most recent releases exist to satisfy CRAN: restricting vignette builds to gcc, adding V8 to Suggests, and a plain resubmission. No user-facing functionality has changed in the visible window, and the three older entries now backfilled are version-bump automation.
protr vs tern.rbmi: editorial side-by-side
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
tern.rbmi
0.0ANALYTICS
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
◆ Current state
tern.rbmi renders the output of {rbmi} reference-based multiple imputation analyses into tern tables for clinical reporting. Its three most recent releases exist to satisfy CRAN: restricting vignette builds to gcc, adding V8 to Suggests, and a plain resubmission. No user-facing functionality has changed in the visible window, and the three older entries now backfilled are version-bump automation.
◆ Where it's heading
This is a thin adapter package and behaves like one — it moves when CRAN or an upstream dependency forces it to. Between 2022 and 2024 the feed shows only version bumps, and the 2025 releases are packaging concerns rather than analysis changes. The newly surfaced 2022 entries reinforce rather than change that reading.
◆ Prediction
Expect the next release to be triggered by a CRAN check failure or an {rbmi} update rather than by new tabulation features.
Alternatives to protr and tern.rbmi
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either protr or tern.rbmi.
constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
See all protr alternatives → · See all tern.rbmi alternatives →
Recent activity from protr and tern.rbmi
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agotern.rbmiVignette built only under gcc
- 1y agotern.rbmiV8 added to Suggests
- 1y agotern.rbmiCRAN resubmission with dependency and workflow updates
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 3y agotern.rbmiAutomated release commit for 0.1.1
- 4y agotern.rbmiDevelopment version bump to 0.1.0.9004
- 4y agotern.rbmiCI automation commit, no release content
Frequently asked questions
What is the difference between protr and tern.rbmi?
They serve adjacent needs but don't currently overlap on shipped themes. protr and tern.rbmi are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is protr better than tern.rbmi?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. protr and tern.rbmi are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.
What are the best alternatives to tern.rbmi?
Top tern.rbmi alternatives in Analytics are ranked by recent ship velocity. Browse the "tern.rbmi alternatives" section above for the current picks, or visit /alternatives/tern-rbmi for the full list with editorial commentary on each.