qqman
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
Comparison · Analytics
ggdemetra vs protr
A side-by-side editorial comparison of ggdemetra and protr — release velocity, themes, recent moves, and the top alternatives to consider.
ggdemetra vs protr: at a glance
What is ggdemetra?
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
ggdemetra is a thin, focused bridge: it puts RJDemetra's seasonal adjustment results — TRAMO-SEATS and X-13 models — into ggplot2 geoms and autoplot methods. Development runs in short bursts separated by long quiet stretches, and the most recent work has been correcting SI ratio handling rather than adding surface. The API is small enough that a single function rename counts as the notable change in a release.
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
ggdemetra vs protr: editorial side-by-side
ggdemetra
0.0ANALYTICS
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
◆ Current state
ggdemetra is a thin, focused bridge: it puts RJDemetra's seasonal adjustment results — TRAMO-SEATS and X-13 models — into ggplot2 geoms and autoplot methods. Development runs in short bursts separated by long quiet stretches, and the most recent work has been correcting SI ratio handling rather than adding surface. The API is small enough that a single function rename counts as the notable change in a release.
◆ Where it's heading
The package has been steadily completing its coverage of the seasonal adjustment output surface: component extractors and autoplot methods in 0.2.3, SI ratio plotting in 0.2.5, then two releases of corrections to make SI ratios behave under TRAMO-SEATS jSA models and when no seasonal component is exported. Alongside that, the naming is being tidied — y_forecast() became raw(), and init_ggplot() shortened the setup boilerplate. This reads as a package approaching the edge of its intended scope and spending its effort on correctness.
◆ Prediction
Two consecutive releases fixing SI ratios under TRAMO-SEATS suggest that code path is the least settled part of the package, so further corrections there are the most likely next move. The entries give no indication of new model families or plot types being planned.
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
Alternatives to ggdemetra and protr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ggdemetra or protr.
constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
See all ggdemetra alternatives → · See all protr alternatives →
Recent activity from ggdemetra and protr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoggdemetrasiratio() fix when TRAMO-SEATS exports no seasonal component
- 2y agoggdemetraraw() replaces y_forecast(); new init_ggplot() helper
- 2y agoggdemetraRe-tagged moments later as 0.2.7
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 3y agoggdemetraSI ratio plotting functions land
- 5y agoggdemetrats2df() conversion helper and geom_outlier date fix
- 6y agoggdemetrageom_arima no longer recomputes the model
Frequently asked questions
What is the difference between ggdemetra and protr?
They serve adjacent needs but don't currently overlap on shipped themes. ggdemetra and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ggdemetra better than protr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ggdemetra and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to ggdemetra?
Top ggdemetra alternatives in Analytics are ranked by recent ship velocity. Browse the "ggdemetra alternatives" section above for the current picks, or visit /alternatives/ggdemetra for the full list with editorial commentary on each.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.