paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
protr vs textplot
A side-by-side editorial comparison of protr and textplot — release velocity, themes, recent moves, and the top alternatives to consider.
protr vs textplot: at a glance
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
What is textplot?
A bnosac plotting utility in maintenance mode, shipping once every few years
textplot is the visualisation member of the bnosac NLP family, providing plot methods for dependency parses, biterm topic clusters, co-occurrence graphs, correlation lines and word embeddings. The function surface has been stable since 0.2.0 added textplot_embedding_2d in 2021. The 2026 release touches only documentation links and a vignette guard.
protr vs textplot: editorial side-by-side
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
textplot
0.0ANALYTICS
A bnosac plotting utility in maintenance mode, shipping once every few years
◆ Current state
textplot is the visualisation member of the bnosac NLP family, providing plot methods for dependency parses, biterm topic clusters, co-occurrence graphs, correlation lines and word embeddings. The function surface has been stable since 0.2.0 added textplot_embedding_2d in 2021. The 2026 release touches only documentation links and a vignette guard.
◆ Where it's heading
This is a settled package, not a developing one. Releases since 0.2.0 have been reactive: a topic-assignment bug, a layout argument, and now cleanup after the archival of a dependency it linked to. The cadence — four years between 0.2.2 and 0.2.3 — tracks CRAN housekeeping on the wider bnosac stack rather than any roadmap of its own.
◆ Prediction
Expect the same pattern: the next release will most likely be another CRAN-compliance pass triggered by a change in udpipe, BTM or another sibling package, rather than a new textplot_* function.
Alternatives to protr and textplot
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either protr or textplot.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all protr alternatives → · See all textplot alternatives →
Recent activity from protr and textplot
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 6mo agotextplotDrop link to archived ggalt, guard vignette model download
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 4y agotextplotDependency-parse plots gain a layout argument
- 4y agotextplotFix biterm topic assignment in cluster plots
- 4y agotextplotAdds 2D embedding plots
- 5y agotextplotMake example conditional on udpipe availability
- 6y agotextplotPlot functions become generic; igraph moved to Suggests
Frequently asked questions
What is the difference between protr and textplot?
They serve adjacent needs but don't currently overlap on shipped themes. protr and textplot are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is protr better than textplot?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. protr and textplot are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.
What are the best alternatives to textplot?
Top textplot alternatives in Analytics are ranked by recent ship velocity. Browse the "textplot alternatives" section above for the current picks, or visit /alternatives/textplot for the full list with editorial commentary on each.