paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
grex vs textplot
A side-by-side editorial comparison of grex and textplot — release velocity, themes, recent moves, and the top alternatives to consider.
grex vs textplot: at a glance
What is grex?
grex is a lookup table with a version number — it ships when the annotation moves.
grex converts the deprecated Ensembl gene IDs found in GTEx data into current gene symbols and identifiers, using org.Hs.eg.db as its reference. Its value is entirely in that bundled reference data, so a release either refreshes the mapping or does nothing to it. The 2025 release does nothing to it: GitHub Actions for the docs site, a check-note fix, and a smaller vignette.
What is textplot?
A bnosac plotting utility in maintenance mode, shipping once every few years
textplot is the visualisation member of the bnosac NLP family, providing plot methods for dependency parses, biterm topic clusters, co-occurrence graphs, correlation lines and word embeddings. The function surface has been stable since 0.2.0 added textplot_embedding_2d in 2021. The 2026 release touches only documentation links and a vignette guard.
grex vs textplot: editorial side-by-side
grex
0.0ANALYTICS
grex is a lookup table with a version number — it ships when the annotation moves.
◆ Current state
grex converts the deprecated Ensembl gene IDs found in GTEx data into current gene symbols and identifiers, using org.Hs.eg.db as its reference. Its value is entirely in that bundled reference data, so a release either refreshes the mapping or does nothing to it. The 2025 release does nothing to it: GitHub Actions for the docs site, a check-note fix, and a smaller vignette.
◆ Where it's heading
The annotation refreshes stopped. Between 2017 and 2019 the package tracked org.Hs.eg.db through four versions and added the GTEx V7 identifier set; since then the reference has stood still while the releases turned to packaging. That gap matters more here than it would elsewhere — a stale mapping table silently returns outdated symbols rather than failing, so the package's core asset ages invisibly.
◆ Prediction
Nothing in these entries signals a planned data refresh, and the six-year pattern suggests the next release will again be infrastructure. Users needing current annotations should check which org.Hs.eg.db version is bundled rather than assume the version number reflects it.
textplot
0.0ANALYTICS
A bnosac plotting utility in maintenance mode, shipping once every few years
◆ Current state
textplot is the visualisation member of the bnosac NLP family, providing plot methods for dependency parses, biterm topic clusters, co-occurrence graphs, correlation lines and word embeddings. The function surface has been stable since 0.2.0 added textplot_embedding_2d in 2021. The 2026 release touches only documentation links and a vignette guard.
◆ Where it's heading
This is a settled package, not a developing one. Releases since 0.2.0 have been reactive: a topic-assignment bug, a layout argument, and now cleanup after the archival of a dependency it linked to. The cadence — four years between 0.2.2 and 0.2.3 — tracks CRAN housekeeping on the wider bnosac stack rather than any roadmap of its own.
◆ Prediction
Expect the same pattern: the next release will most likely be another CRAN-compliance pass triggered by a change in udpipe, BTM or another sibling package, rather than a new textplot_* function.
Alternatives to grex and textplot
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either grex or textplot.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
protr
protr's feature set is finished; the work now is surviving Bioconductor's churn.
See all grex alternatives → · See all textplot alternatives →
Recent activity from grex and textplot
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 6mo agotextplotDrop link to archived ggalt, guard vignette model download
- 1y agogrexgrex 1.9.1: pkgdown on Actions, smaller vignette
- 4y agotextplotDependency-parse plots gain a layout argument
- 4y agotextplotFix biterm topic assignment in cluster plots
- 4y agotextplotAdds 2D embedding plots
- 5y agotextplotMake example conditional on udpipe availability
- 6y agotextplotPlot functions become generic; igraph moved to Suggests
- 7y agogrexgrex 1.9 refreshes the reference to org.Hs.eg.db 3.8.2
- 8y agogrexgrex 1.8 adds GTEx V7 IDs, updates to org.Hs.eg.db 3.6.0
- 8y agogrexgrex 1.7 updates the reference to org.Hs.eg.db 3.4.2
- 8y agogrexgrex 1.6 drops Google Fonts from vignettes
- 9y agogrexgrex 1.5 adds a pkgdown site and refreshes the reference
Frequently asked questions
What is the difference between grex and textplot?
They serve adjacent needs but don't currently overlap on shipped themes. grex and textplot are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is grex better than textplot?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. grex and textplot are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to grex?
Top grex alternatives in Analytics are ranked by recent ship velocity. Browse the "grex alternatives" section above for the current picks, or visit /alternatives/grex-r for the full list with editorial commentary on each.
What are the best alternatives to textplot?
Top textplot alternatives in Analytics are ranked by recent ship velocity. Browse the "textplot alternatives" section above for the current picks, or visit /alternatives/textplot for the full list with editorial commentary on each.