tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
Comparison · Analytics
hstats vs protr
A side-by-side editorial comparison of hstats and protr — release velocity, themes, recent moves, and the top alternatives to consider.
hstats vs protr: at a glance
What is hstats?
hstats settled into maintenance after its 1.0 restructuring, with model coverage the only thing still growing.
hstats computes Friedman's H-statistics, partial dependence, ICE curves and permutation importance for any model exposing a prediction function. The releases in view are consolidation: performance work on plain data.frames, ICE facetting for multioutput models, ranger survival support, and a ggplot 4.0 compatibility pass in 2025. The package moved to the ModelOriented organisation in 1.2.0.
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
hstats vs protr: editorial side-by-side
hstats
0.0ANALYTICS
hstats settled into maintenance after its 1.0 restructuring, with model coverage the only thing still growing.
◆ Current state
hstats computes Friedman's H-statistics, partial dependence, ICE curves and permutation importance for any model exposing a prediction function. The releases in view are consolidation: performance work on plain data.frames, ICE facetting for multioutput models, ranger survival support, and a ggplot 4.0 compatibility pass in 2025. The package moved to the ModelOriented organisation in 1.2.0.
◆ Where it's heading
The structural work — the hstats_matrix object, quantile approximation, revised plotting — landed in 1.0.0 just outside this window, and nothing since has changed the package's shape. What continues is model-coverage plumbing: mlr3 classification modes, ranger survival behind a survival argument, and factor predictions added in 1.1.0 then removed again in 1.2.0. The most recent releases are compatibility-driven, tracking ggplot2 rather than the interaction statistics.
◆ Prediction
Expect the next release to be another dependency-compatibility pass or a new model backend working out of the box, rather than new interaction statistics.
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
Alternatives to hstats and protr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either hstats or protr.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
ggmagnify
A single-purpose ggplot2 inset tool, refining the same three arguments.
symengine
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
gtfstools
gtfstools stopped guarding its own object model and started accepting everyone else's.
quantities
The glue package that makes R carry units and uncertainty through the same calculation.
See all hstats alternatives → · See all protr alternatives →
Recent activity from hstats and protr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 10mo agohstatsggplot 4.0 compatibility and test coverage
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 1y agohstatsranger survival models supported out of the box
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agohstatsMoves to ModelOriented; factor predictions removed
- 2y agohstatsICE facets for multioutput models; mlr3 fixes
- 2y agohstatsFaster data.frame paths; NaN H-statistics fixed
- 2y agohstatsFactor predictions and line-style 2D partial dependence
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
Frequently asked questions
What is the difference between hstats and protr?
They serve adjacent needs but don't currently overlap on shipped themes. hstats and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is hstats better than protr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. hstats and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to hstats?
Top hstats alternatives in Analytics are ranked by recent ship velocity. Browse the "hstats alternatives" section above for the current picks, or visit /alternatives/hstats for the full list with editorial commentary on each.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.