tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
Comparison · Analytics
arulesViz vs protr
A side-by-side editorial comparison of arulesViz and protr — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:maintenance-mode
arulesViz vs protr: at a glance
What is arulesViz?
arulesViz finished its move to ggplot2 and has been coasting on maintenance since.
arulesViz draws the association rules produced by arules — scatterplots, matrix and grouped-matrix views, rule graphs, and a Shiny explorer. The rendering foundation has been settled since 1.5.0 made ggplot2 the default engine for most plots. The two most recent releases contain no new capability: roxygen migration and deprecation catch-up in 1.5.3, and a partial-argument-match cleanup in 1.5.4 that landed the same week as the identical fix in sibling package seriation.
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
arulesViz vs protr: editorial side-by-side
arulesViz
0.0ANALYTICS
arulesViz finished its move to ggplot2 and has been coasting on maintenance since.
◆ Current state
arulesViz draws the association rules produced by arules — scatterplots, matrix and grouped-matrix views, rule graphs, and a Shiny explorer. The rendering foundation has been settled since 1.5.0 made ggplot2 the default engine for most plots. The two most recent releases contain no new capability: roxygen migration and deprecation catch-up in 1.5.3, and a partial-argument-match cleanup in 1.5.4 that landed the same week as the identical fix in sibling package seriation.
◆ Where it's heading
The 2021 releases were a deliberate consolidation. 1.4-0 added ggplot2 engines and cut plotly_arules and the experimental iplots support out of the interface; 1.5.0 promoted ggplot2 to default and exposed the conversions to igraph and matrix so users could build their own views; 1.5-1 filled gaps in the graph and grouped-matrix methods. Since then the package tracks its dependencies rather than extending itself, which is a reasonable end state for a mature visualization layer.
◆ Prediction
Expect continued reactive releases keyed to ggplot2 and igraph deprecations, which have driven two of the last three updates. Nothing in these entries suggests new plot methods are planned.
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
Alternatives to arulesViz and protr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either arulesViz or protr.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
ggmagnify
A single-purpose ggplot2 inset tool, refining the same three arguments.
symengine
An R symbolic-maths binding whose changelog is really the C++ core's release notes.
gtfstools
gtfstools stopped guarding its own object model and started accepting everyone else's.
quantities
The glue package that makes R carry units and uncertainty through the same calculation.
See all arulesViz alternatives → · See all protr alternatives →
Recent activity from arulesViz and protr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11mo agoarulesVizarulesViz 1.5.4: partial argument matches, translucent NA color
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoarulesVizarulesViz 1.5.3 moves docs to roxygen, updates deprecated calls
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 4y agoarulesVizarulesViz 1.5-1 extends graph and grouped-matrix plots
- 5y agoarulesVizarulesViz 1.5.0 makes ggplot2 the default plotting engine
- 5y agoarulesVizarulesViz 1.4-0 adds ggplot2 engines, drops plotly_arules and iplots
- 7y agoarulesVizarulesViz 1.3-3 cleans up the ruleExplorer interface
Frequently asked questions
What is the difference between arulesViz and protr?
Both compete on the same themes — maintenance-mode — within Analytics. arulesViz and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is arulesViz better than protr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. arulesViz and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to arulesViz?
Top arulesViz alternatives in Analytics are ranked by recent ship velocity. Browse the "arulesViz alternatives" section above for the current picks, or visit /alternatives/arulesviz-r for the full list with editorial commentary on each.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.