protr
protr's feature set is finished; the work now is surviving Bioconductor's churn.
Comparison · Analytics
ardlverse vs qtl
A side-by-side editorial comparison of ardlverse and qtl — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
ardlverse vs qtl: at a glance
What is ardlverse?
An outside audit against Stata found seven errors in ardlverse's panel estimator, including regressions with no intercept.
A small R package for autoregressive distributed lag models, with only three releases on record. The first two were administrative — a CRAN version note and a Zenodo metadata update. The third, 2.0.0, is a correction release built entirely from an external audit of panel_ardl() against Stata's xtpmg, and it is the only entry here with substantive content.
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
ardlverse vs qtl: editorial side-by-side
ardlverse
0.0ANALYTICS
An outside audit against Stata found seven errors in ardlverse's panel estimator, including regressions with no intercept.
◆ Current state
A small R package for autoregressive distributed lag models, with only three releases on record. The first two were administrative — a CRAN version note and a Zenodo metadata update. The third, 2.0.0, is a correction release built entirely from an external audit of panel_ardl() against Stata's xtpmg, and it is the only entry here with substantive content.
◆ Where it's heading
The package's direction is now set by verification against an established reference implementation rather than by feature work. The seven fixes bring panel_ardl() into strict alignment with the original Pesaran, Shin and Smith framework, and the most serious of them is structural: internal regressions used lm.fit(), which unlike lm() does not append an intercept, so every short-run regression across the PMG, MG and DFE estimators was forced through the origin. Design matrices now carry a column of ones and DFE reconstructs the grand-mean intercept to match standard fixed-effects output.
◆ Prediction
Expect the next releases to extend the same audit approach to the remaining estimators, since a package that has been validated against xtpmg on one function invites the same question about the rest.
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
Alternatives to ardlverse and qtl
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ardlverse or qtl.
seriation
seriation stopped shipping algorithms and started shipping a way to pick between them.
arulesViz
arulesViz finished its move to ggplot2 and has been coasting on maintenance since.
EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
See all ardlverse alternatives → · See all qtl alternatives →
Recent activity from ardlverse and qtl
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoardlverseSeven panel_ardl fixes after an audit against Stata's xtpmg
- 5mo agoardlverseZenodo metadata updated with ORCID
- 5mo agoardlverseardlverse v1.1.3
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between ardlverse and qtl?
Both compete on the same themes — r-package — within Analytics. ardlverse and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ardlverse better than qtl?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ardlverse and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to ardlverse?
Top ardlverse alternatives in Analytics are ranked by recent ship velocity. Browse the "ardlverse alternatives" section above for the current picks, or visit /alternatives/ardlverse-r for the full list with editorial commentary on each.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.