paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
ardlverse vs EvoPhylo
A side-by-side editorial comparison of ardlverse and EvoPhylo — release velocity, themes, recent moves, and the top alternatives to consider.
ardlverse vs EvoPhylo: at a glance
What is ardlverse?
An outside audit against Stata found seven errors in ardlverse's panel estimator, including regressions with no intercept.
A small R package for autoregressive distributed lag models, with only three releases on record. The first two were administrative — a CRAN version note and a Zenodo metadata update. The third, 2.0.0, is a correction release built entirely from an external audit of panel_ardl() against Stata's xtpmg, and it is the only entry here with substantive content.
What is EvoPhylo?
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
ardlverse vs EvoPhylo: editorial side-by-side
ardlverse
0.0ANALYTICS
An outside audit against Stata found seven errors in ardlverse's panel estimator, including regressions with no intercept.
◆ Current state
A small R package for autoregressive distributed lag models, with only three releases on record. The first two were administrative — a CRAN version note and a Zenodo metadata update. The third, 2.0.0, is a correction release built entirely from an external audit of panel_ardl() against Stata's xtpmg, and it is the only entry here with substantive content.
◆ Where it's heading
The package's direction is now set by verification against an established reference implementation rather than by feature work. The seven fixes bring panel_ardl() into strict alignment with the original Pesaran, Shin and Smith framework, and the most serious of them is structural: internal regressions used lm.fit(), which unlike lm() does not append an intercept, so every short-run regression across the PMG, MG and DFE estimators was forced through the origin. Design matrices now carry a column of ones and DFE reconstructs the grand-mean intercept to match standard fixed-effects output.
◆ Prediction
Expect the next releases to extend the same audit approach to the remaining estimators, since a package that has been validated against xtpmg on one function invites the same question about the rest.
EvoPhylo
0.0ANALYTICS
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
◆ Current state
EvoPhylo handles post-processing for Bayesian evolutionary rate and fossilized birth-death analyses, originally against MrBayes output. The 0.3.2 release added BEAST2 support for both FBD functions and rates analysis, making it usable by labs on either platform. Since then there has been one clock-partition fix and, in August 2025, a release whose notes say only that there are updated functions and bug fixes.
◆ Where it's heading
The package's substantive arc ended with the 0.3.2 publication release, which arrived with peer-review revisions and three first-time contributors — the shape of software built to accompany a paper. What follows is thin: a MrBayes plotting correction in 0.3.3, then a two-year gap and a release with no described contents. The August 2025 entry may contain real work, but the notes give a reader nothing to judge.
◆ Prediction
Without release notes on the latest version there is no observable basis for predicting the next move; the two-year gap before it suggests activity tied to specific research needs rather than a maintenance cadence.
Alternatives to ardlverse and EvoPhylo
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ardlverse or EvoPhylo.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all ardlverse alternatives → · See all EvoPhylo alternatives →
Recent activity from ardlverse and EvoPhylo
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoardlverseSeven panel_ardl fixes after an audit against Stata's xtpmg
- 5mo agoardlverseZenodo metadata updated with ORCID
- 5mo agoardlverseardlverse v1.1.3
- 11mo agoEvoPhyloEvoPhylo v. 0.3.5
- 3y agoEvoPhyloEvoPhylo 0.3.3 fixes back-rate plots for MrBayes
- 3y agoEvoPhyloEvoPhylo 0.3.2 adds BEAST2 support for FBD and rates
Frequently asked questions
What is the difference between ardlverse and EvoPhylo?
They serve adjacent needs but don't currently overlap on shipped themes. ardlverse and EvoPhylo are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ardlverse better than EvoPhylo?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ardlverse and EvoPhylo are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to ardlverse?
Top ardlverse alternatives in Analytics are ranked by recent ship velocity. Browse the "ardlverse alternatives" section above for the current picks, or visit /alternatives/ardlverse-r for the full list with editorial commentary on each.
What are the best alternatives to EvoPhylo?
Top EvoPhylo alternatives in Analytics are ranked by recent ship velocity. Browse the "EvoPhylo alternatives" section above for the current picks, or visit /alternatives/evophylo for the full list with editorial commentary on each.