paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
ardlverse vs treespace
A side-by-side editorial comparison of ardlverse and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
ardlverse vs treespace: at a glance
What is ardlverse?
An outside audit against Stata found seven errors in ardlverse's panel estimator, including regressions with no intercept.
A small R package for autoregressive distributed lag models, with only three releases on record. The first two were administrative — a CRAN version note and a Zenodo metadata update. The third, 2.0.0, is a correction release built entirely from an external audit of panel_ardl() against Stata's xtpmg, and it is the only entry here with substantive content.
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
ardlverse vs treespace: editorial side-by-side
ardlverse
0.0ANALYTICS
An outside audit against Stata found seven errors in ardlverse's panel estimator, including regressions with no intercept.
◆ Current state
A small R package for autoregressive distributed lag models, with only three releases on record. The first two were administrative — a CRAN version note and a Zenodo metadata update. The third, 2.0.0, is a correction release built entirely from an external audit of panel_ardl() against Stata's xtpmg, and it is the only entry here with substantive content.
◆ Where it's heading
The package's direction is now set by verification against an established reference implementation rather than by feature work. The seven fixes bring panel_ardl() into strict alignment with the original Pesaran, Shin and Smith framework, and the most serious of them is structural: internal regressions used lm.fit(), which unlike lm() does not append an intercept, so every short-run regression across the PMG, MG and DFE estimators was forced through the origin. Design matrices now carry a column of ones and DFE reconstructs the grand-mean intercept to match standard fixed-effects output.
◆ Prediction
Expect the next releases to extend the same audit approach to the remaining estimators, since a package that has been validated against xtpmg on one function invites the same question about the rest.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to ardlverse and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ardlverse or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all ardlverse alternatives → · See all treespace alternatives →
Recent activity from ardlverse and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoardlverseSeven panel_ardl fixes after an audit against Stata's xtpmg
- 5mo agoardlverseZenodo metadata updated with ORCID
- 5mo agoardlverseardlverse v1.1.3
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between ardlverse and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. ardlverse and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ardlverse better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ardlverse and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to ardlverse?
Top ardlverse alternatives in Analytics are ranked by recent ship velocity. Browse the "ardlverse alternatives" section above for the current picks, or visit /alternatives/ardlverse-r for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.