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A 2017 chemometrics method frozen in place, visited only when CRAN changes its documentation rules.
Comparison · Analytics
rstatix vs vegan
A side-by-side editorial comparison of rstatix and vegan — release velocity, themes, recent moves, and the top alternatives to consider.
rstatix vs vegan: at a glance
What is rstatix?
rstatix hit 1.0 by unrounding every p-value it has ever returned
rstatix is the pipe-friendly test wrapper behind most ggpubr annotation workflows — t-tests, Wilcoxon, ANOVA, post-hoc comparisons, effect sizes, all returning tidy data frames. After three quiet years of CRAN-compat patching, it shipped 1.0.0 and 1.1.0 three weeks apart in mid-2026. Both releases push in the same direction: interval estimates and full-precision output for numbers the package previously rounded or omitted.
What is vegan?
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
rstatix vs vegan: editorial side-by-side
rstatix
2.5ANALYTICS
rstatix hit 1.0 by unrounding every p-value it has ever returned
◆ Current state
rstatix is the pipe-friendly test wrapper behind most ggpubr annotation workflows — t-tests, Wilcoxon, ANOVA, post-hoc comparisons, effect sizes, all returning tidy data frames. After three quiet years of CRAN-compat patching, it shipped 1.0.0 and 1.1.0 three weeks apart in mid-2026. Both releases push in the same direction: interval estimates and full-precision output for numbers the package previously rounded or omitted.
◆ Where it's heading
The work is about matching what dedicated effect-size packages give you without taking on their dependencies. Confidence intervals for partial eta squared and for Cohen's d are both computed in base R from noncentral distributions and both check against effectsize; compact letter displays are computed in base R against multcompView. The pattern is deliberate — reproduce the reference implementation, add no imports. Alongside that, the package has started correcting statistical hygiene it got wrong for years, most visibly by no longer rounding p-values before adjusting them.
◆ Prediction
The analytic-interval machinery now exists for eta squared and Cohen's d; the untouched effect sizes in the package — eta squared for nonparametric tests, Cramer's V, rank-biserial correlation — are the obvious next targets for the same base-R noncentral treatment.
vegan
0.0ANALYTICS
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
◆ Current state
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
◆ Where it's heading
Two long deprecation programs are converging. Plotting is being pushed out of the package: lattice functions are deprecated in favor of ggplot2 equivalents now living in ggvegan, a separate CRAN package, while vegan's own base graphics were rebuilt around independently configurable score types and pipe-based construction. Meanwhile the statistical core is being made internally consistent — add1 and drop1 no longer use different internal models, and summary is no longer an accepted route to ordination scores.
◆ Prediction
Expect the remaining lattice functions to go defunct and more plotting responsibility to shift to ggvegan, leaving vegan as the statistical engine with a thin base graphics layer.
Alternatives to rstatix and vegan
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either rstatix or vegan.
fastplyr
A fast dplyr stand-in that keeps finding new places to skip work entirely.
trias
Belgium's invasive-species indicator toolkit is in steady refinement, one plotting edge case at a time.
icesSAG
The ICES stock assessment client took upload away in 2024 and spent two years giving it back.
dggridR
A discrete global grid generator grew cell traversal and became a usable spatial index.
ichimoku
A cloud-chart package quietly swapping its dependencies for its maintainer's own libraries.
See all rstatix alternatives → · See all vegan alternatives →
Recent activity from rstatix and vegan
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 22d agorstatixrstatix 1.1.0 gives Cohen's d a deterministic confidence interval
- 1mo agorstatixrstatix 1.0.0 stops rounding p-values before adjusting them ⚡
- 2mo agoveganParallel processing stabilized, especially on Windows
- 5mo agoveganLattice plotting deprecated as ggvegan reaches CRAN
- 9mo agorstatixrstatix 0.7.3
- 10mo agoveganPartial RDA permutation tests adopt residualized predictors
- 1y agoveganOrdination graphics rebuilt and adonis made defunct ⚡
- 1y agoveganRelease chasing undefined behavior in a C function
- 1y agoveganpca, ca and pco added for unconstrained ordination
- 3y agorstatixrstatix 0.7.2
- 3y agorstatixrstatix 0.7.1
- 5y agorstatixrstatix 0.7.0
Frequently asked questions
What is the difference between rstatix and vegan?
They serve adjacent needs but don't currently overlap on shipped themes. rstatix is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is rstatix better than vegan?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. rstatix is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to rstatix?
Top rstatix alternatives in Analytics are ranked by recent ship velocity. Browse the "rstatix alternatives" section above for the current picks, or visit /alternatives/rstatix for the full list with editorial commentary on each.
What are the best alternatives to vegan?
Top vegan alternatives in Analytics are ranked by recent ship velocity. Browse the "vegan alternatives" section above for the current picks, or visit /alternatives/vegan-r for the full list with editorial commentary on each.