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Comparison · Analytics
icesSAG vs vegan
A side-by-side editorial comparison of icesSAG and vegan — release velocity, themes, recent moves, and the top alternatives to consider.
icesSAG vs vegan: at a glance
What is icesSAG?
The ICES stock assessment client took upload away in 2024 and spent two years giving it back.
icesSAG is the R client for the ICES Stock Assessment Graphs database, used by fisheries scientists to retrieve and publish stock assessment summaries and figures. The 1.5.0 release repointed every function at a new API, replaced token authentication with JWT via icesConnect, and dropped file upload entirely. Upload returned in 1.6.2, now routing through icesDatsu to check file format and validate data before submission.
What is vegan?
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
icesSAG vs vegan: editorial side-by-side
icesSAG
0.0ANALYTICS
The ICES stock assessment client took upload away in 2024 and spent two years giving it back.
◆ Current state
icesSAG is the R client for the ICES Stock Assessment Graphs database, used by fisheries scientists to retrieve and publish stock assessment summaries and figures. The 1.5.0 release repointed every function at a new API, replaced token authentication with JWT via icesConnect, and dropped file upload entirely. Upload returned in 1.6.2, now routing through icesDatsu to check file format and validate data before submission.
◆ Where it's heading
The package is consolidating onto the shared ices-tools stack rather than carrying its own machinery — authentication moved to icesConnect, validation to icesDatsu, and the icesVocab dependency was dropped once it was no longer needed. Alongside that, redundant graph functions were deprecated and caching was added to reduce load on the server. Releases are infrequent and driven by upstream API changes.
◆ Prediction
Expect the next release to follow whatever the ICES service or the sibling ices-tools packages change next, rather than introducing new analysis capability of its own.
vegan
0.0ANALYTICS
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
◆ Current state
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
◆ Where it's heading
Two long deprecation programs are converging. Plotting is being pushed out of the package: lattice functions are deprecated in favor of ggplot2 equivalents now living in ggvegan, a separate CRAN package, while vegan's own base graphics were rebuilt around independently configurable score types and pipe-based construction. Meanwhile the statistical core is being made internally consistent — add1 and drop1 no longer use different internal models, and summary is no longer an accepted route to ordination scores.
◆ Prediction
Expect the remaining lattice functions to go defunct and more plotting responsibility to shift to ggvegan, leaving vegan as the statistical engine with a thin base graphics layer.
Alternatives to icesSAG and vegan
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either icesSAG or vegan.
n1qn1c
A Fortran-descended optimizer got thread-safe, then found two flags that never worked.
ggstatsplot
ggstatsplot reached 1.0 by adding tests, having outsourced its statistics years ago.
collapse
collapse got a JSS paper and a 7x fmean speedup in the same release.
gtsummary
gtsummary is quietly rebuilding itself around analysis results data, one table verb at a time.
broadcast
broadcast is filling in NumPy-style array broadcasting for R, operator by operator.
See all icesSAG alternatives → · See all vegan alternatives →
Recent activity from icesSAG and vegan
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoveganParallel processing stabilized, especially on Windows
- 3mo agoicesSAGStock upload restored with pre-submission validation
- 5mo agoveganLattice plotting deprecated as ggvegan reaches CRAN
- 10mo agoveganPartial RDA permutation tests adopt residualized predictors
- 1y agoveganOrdination graphics rebuilt and adonis made defunct ⚡
- 1y agoveganRelease chasing undefined behavior in a C function
- 1y agoicesSAGEvery function repointed at a new API, with JWT auth ⚡
- 1y agoveganpca, ca and pco added for unconstrained ordination
- 6y agoicesSAGlocal release 1.3-5
Frequently asked questions
What is the difference between icesSAG and vegan?
They serve adjacent needs but don't currently overlap on shipped themes. icesSAG and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is icesSAG better than vegan?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. icesSAG and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to icesSAG?
Top icesSAG alternatives in Analytics are ranked by recent ship velocity. Browse the "icesSAG alternatives" section above for the current picks, or visit /alternatives/icessag for the full list with editorial commentary on each.
What are the best alternatives to vegan?
Top vegan alternatives in Analytics are ranked by recent ship velocity. Browse the "vegan alternatives" section above for the current picks, or visit /alternatives/vegan-r for the full list with editorial commentary on each.