distributions3
distributions3 changes hands to Achim Zeileis, and a moment calculation bug goes with it.
Comparison · Analytics
n2kanalysis vs vegan
A side-by-side editorial comparison of n2kanalysis and vegan — release velocity, themes, recent moves, and the top alternatives to consider.
n2kanalysis vs vegan: at a glance
What is n2kanalysis?
n2kanalysis has spent eight years wiring INLA models to an S3 bucket.
n2kanalysis is the analysis framework behind INBO's nature monitoring networks, wrapping INLA model fitting with a manifest-driven pipeline whose intermediate objects live in S3. Capability has arrived in discrete lumps: hurdle models with imputation and a manifest-to-bash converter in 0.3.1, SPDE spatial elements in INLA models in 0.4.0, and in 0.4.1 a connect_inbo_s3() function that makes temporary credentials available to the R functions.
What is vegan?
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
n2kanalysis vs vegan: editorial side-by-side
n2kanalysis
0.0ANALYTICS
n2kanalysis has spent eight years wiring INLA models to an S3 bucket.
◆ Current state
n2kanalysis is the analysis framework behind INBO's nature monitoring networks, wrapping INLA model fitting with a manifest-driven pipeline whose intermediate objects live in S3. Capability has arrived in discrete lumps: hurdle models with imputation and a manifest-to-bash converter in 0.3.1, SPDE spatial elements in INLA models in 0.4.0, and in 0.4.1 a connect_inbo_s3() function that makes temporary credentials available to the R functions.
◆ Where it's heading
Development is slow, institutional, and driven by the modeling needs of specific monitoring programmes rather than a product roadmap. The pattern across the window is a new model class when the ecology requires one, then a stretch of infrastructure work around storage, credentials and pipeline efficiency. The 0.4.1 release is characteristic — a credentials helper, better result retrieval, more tests and a code-style pass, with no modeling change at all. Much of the early history is recorded only as merge-commit titles, so the release record thins out the further back it goes.
◆ Prediction
Expect the next substantive release to add another INLA model variant as a monitoring programme needs it, with S3 and credential handling continuing to absorb the maintenance effort in between.
vegan
0.0ANALYTICS
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
◆ Current state
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
◆ Where it's heading
Two long deprecation programs are converging. Plotting is being pushed out of the package: lattice functions are deprecated in favor of ggplot2 equivalents now living in ggvegan, a separate CRAN package, while vegan's own base graphics were rebuilt around independently configurable score types and pipe-based construction. Meanwhile the statistical core is being made internally consistent — add1 and drop1 no longer use different internal models, and summary is no longer an accepted route to ordination scores.
◆ Prediction
Expect the remaining lattice functions to go defunct and more plotting responsibility to shift to ggvegan, leaving vegan as the statistical engine with a thin base graphics layer.
Alternatives to n2kanalysis and vegan
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either n2kanalysis or vegan.
mizer
After two and a half years dormant, mizer shipped three major versions in seven weeks.
vellumplot
vellumplot tags its first release with a bet most R grammars don't make: the static figure and the widget are the same object.
vellum
vellum's bugs are now found by using it, not testing it — the downstream grammar is doing the QA.
n1qn1c
A Fortran-descended optimizer got thread-safe, then found two flags that never worked.
ggstatsplot
ggstatsplot reached 1.0 by adding tests, having outsourced its statistics years ago.
See all n2kanalysis alternatives → · See all vegan alternatives →
Recent activity from n2kanalysis and vegan
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoveganParallel processing stabilized, especially on Windows
- 4mo agon2kanalysisconnect_inbo_s3() exposes temporary credentials to R
- 5mo agoveganLattice plotting deprecated as ggvegan reaches CRAN
- 10mo agoveganPartial RDA permutation tests adopt residualized predictors
- 1y agoveganOrdination graphics rebuilt and adonis made defunct ⚡
- 1y agoveganRelease chasing undefined behavior in a C function
- 1y agon2kanalysisINLA models with SPDE elements supported
- 1y agoveganpca, ca and pco added for unconstrained ordination
- 2y agon2kanalysisfit_model() made more efficient
- 3y agon2kanalysisHurdle models with imputation added
- 7y agon2kanalysisImputed data handling improvements
- 7y agon2kanalysisINLA models consolidated onto a single class
Frequently asked questions
What is the difference between n2kanalysis and vegan?
They serve adjacent needs but don't currently overlap on shipped themes. n2kanalysis and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is n2kanalysis better than vegan?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. n2kanalysis and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to n2kanalysis?
Top n2kanalysis alternatives in Analytics are ranked by recent ship velocity. Browse the "n2kanalysis alternatives" section above for the current picks, or visit /alternatives/n2kanalysis for the full list with editorial commentary on each.
What are the best alternatives to vegan?
Top vegan alternatives in Analytics are ranked by recent ship velocity. Browse the "vegan alternatives" section above for the current picks, or visit /alternatives/vegan-r for the full list with editorial commentary on each.