paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
qtl vs socialmixr
A side-by-side editorial comparison of qtl and socialmixr — release velocity, themes, recent moves, and the top alternatives to consider.
qtl vs socialmixr: at a glance
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
What is socialmixr?
socialmixr breaks its one-shot contact_matrix() call into a composable pipeline.
socialmixr builds age-structured social contact matrices from survey data for infectious-disease modelling. Version 0.6.0 replaces the monolithic contact_matrix() entry point with a chain of composable steps — filter, assign age groups, weigh, compute, then symmetrise, split or convert per capita — behind a new contact_matrix S3 class. Survey downloading is being handed off to a separate contactsurveys package.
qtl vs socialmixr: editorial side-by-side
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
socialmixr
0.0ANALYTICS
socialmixr breaks its one-shot contact_matrix() call into a composable pipeline.
◆ Current state
socialmixr builds age-structured social contact matrices from survey data for infectious-disease modelling. Version 0.6.0 replaces the monolithic contact_matrix() entry point with a chain of composable steps — filter, assign age groups, weigh, compute, then symmetrise, split or convert per capita — behind a new contact_matrix S3 class. Survey downloading is being handed off to a separate contactsurveys package.
◆ Where it's heading
The arc from 0.4.0 to 0.6.0 is decomposition: first extracting helpers like assign_age_groups(), then moving downloads out of the package, and now exposing every stage of matrix construction as its own verb. Breaking changes are accepted at each step — preserved empty age groups, arrays instead of xtabs, [N,Inf) labels — with the new class inheriting from list so existing $matrix access keeps working. The label change is explicitly aligned with the contactmatrix package.
◆ Prediction
Expect the deprecated dotted argument names and the remaining in-package download paths to be removed once the contactsurveys handoff completes, leaving contact_matrix() as a thin wrapper over the pipeline.
Alternatives to qtl and socialmixr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qtl or socialmixr.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all qtl alternatives → · See all socialmixr alternatives →
Recent activity from qtl and socialmixr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 3mo agosocialmixrContact matrices become a composable pipeline ⚡
- 6mo agosocialmixrPatch: load_survey() handles files without cont_id
- 6mo agosocialmixrAge-group assignment and population lookup split out
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agosocialmixrFaster survey loading and cached Zenodo lookups
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agosocialmixrcontact_matrix() now takes survey objects only
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 2y agosocialmixrTest fixes for machine-precision failures
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between qtl and socialmixr?
They serve adjacent needs but don't currently overlap on shipped themes. qtl and socialmixr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qtl better than socialmixr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qtl and socialmixr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.
What are the best alternatives to socialmixr?
Top socialmixr alternatives in Analytics are ranked by recent ship velocity. Browse the "socialmixr alternatives" section above for the current picks, or visit /alternatives/socialmixr for the full list with editorial commentary on each.