paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
geodist vs qtl
A side-by-side editorial comparison of geodist and qtl — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
geodist vs qtl: at a glance
What is geodist?
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
geodist computes geodesic distances between coordinate pairs in C with no dependencies, offering several measures that trade accuracy for speed — including a 'cheap' approximation used by default. The API is small and largely finished; 0.1.0 added geodist_min() for nearest-match lookups and 0.1.1 is a compiler warning fix.
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
geodist vs qtl: editorial side-by-side
geodist
0.0ANALYTICS
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
◆ Current state
geodist computes geodesic distances between coordinate pairs in C with no dependencies, offering several measures that trade accuracy for speed — including a 'cheap' approximation used by default. The API is small and largely finished; 0.1.0 added geodist_min() for nearest-match lookups and 0.1.1 is a compiler warning fix.
◆ Where it's heading
Development has been about making the speed-accuracy trade visible rather than hiding it. The 0.0.6 release added messages telling users to pick a different measure once the default cheap approximation is applied beyond 100km, where its error stops being negligible. Around that, the work is input handling — tibble support, better lon/lat column matching, vector inputs — and hardening the C code. It is a package that treats being small and correct as the feature.
◆ Prediction
Expect continued low-frequency maintenance: compiler warnings and geodesic source updates account for three of the last six releases, and the function surface has grown by only two entries in five years.
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
Alternatives to geodist and qtl
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either geodist or qtl.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
protr
protr's feature set is finished; the work now is surviving Bioconductor's churn.
Recent activity from geodist and qtl
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agogeodistgeodist 0.1.1 clears a clang warning in geodesic.c
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agogeodistgeodist 0.1.0 adds geodist_min() for nearest matches
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
- 3y agogeodistgeodist 0.0.8 updates geodesic source, fixes clang warnings
- 5y agogeodistgeodist 0.0.7 improves lon/lat column matching and tibbles
- 5y agogeodistgeodist 0.0.6 warns when cheap distances exceed 100km
- 6y agogeodistgeodist 0.0.4 adds geodist_vec() for vector inputs
Frequently asked questions
What is the difference between geodist and qtl?
Both compete on the same themes — r-package — within Analytics. geodist and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is geodist better than qtl?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. geodist and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to geodist?
Top geodist alternatives in Analytics are ranked by recent ship velocity. Browse the "geodist alternatives" section above for the current picks, or visit /alternatives/geodist-r for the full list with editorial commentary on each.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.