paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
protr vs wasserportal
A side-by-side editorial comparison of protr and wasserportal — release velocity, themes, recent moves, and the top alternatives to consider.
protr vs wasserportal: at a glance
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
What is wasserportal?
A Berlin groundwater scraper grew a full IoT publishing pipeline in two days.
wasserportal scrapes groundwater and surface water monitoring data from Wasserportal Berlin — station metadata, water levels, quality series. For its first four years that was the whole product, with releases tracking the portal's own churn: a new API version in 2023, new three-letter variable codes, and a 2026 fix decoding pages as windows-1252 because the server declares UTF-8 but emits Latin-1. In June 2026 it added a ThingsBoard integration, then extended it to self-hosted instances two days later.
protr vs wasserportal: editorial side-by-side
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
wasserportal
0.0ANALYTICS
A Berlin groundwater scraper grew a full IoT publishing pipeline in two days.
◆ Current state
wasserportal scrapes groundwater and surface water monitoring data from Wasserportal Berlin — station metadata, water levels, quality series. For its first four years that was the whole product, with releases tracking the portal's own churn: a new API version in 2023, new three-letter variable codes, and a 2026 fix decoding pages as windows-1252 because the server declares UTF-8 but emits Latin-1. In June 2026 it added a ThingsBoard integration, then extended it to self-hosted instances two days later.
◆ Where it's heading
The package is repositioning from a data-access library into the first half of a monitoring pipeline. 0.6.0 shipped push helpers, device discovery and cleanup, an importable dashboard and a GitHub Actions workflow; 0.7.0 immediately generalised the authentication so it works against self-hosted Community Edition rather than only the Cloud tier, and lifted the push from a five-station demo to the entire groundwater archive. The hardening detail in 0.7.0 — retries on 5xx, warnings when only one of two credentials is set — reads like a maintainer who has run this against a real deployment.
◆ Prediction
The obvious next step is extending the ThingsBoard path to the surface water stations, which the package has flagged as under-supported since 0.1.0. The entries show no other direction under construction.
Alternatives to protr and wasserportal
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either protr or wasserportal.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all protr alternatives → · See all wasserportal alternatives →
Recent activity from protr and wasserportal
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agowasserportalSelf-hosted ThingsBoard support via JWT login
- 1mo agowasserportalThingsBoard integration turns the scraper into a pipeline ⚡
- 3mo agowasserportalwindows-1252 decoding fixes umlaut handling on Windows
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 3y agowasserportalExport and import functions for scraped datasets
- 3y agowasserportalAdapted to Wasserportal's new API version
- 4y agowasserportalTemperature parameter naming corrected
Frequently asked questions
What is the difference between protr and wasserportal?
They serve adjacent needs but don't currently overlap on shipped themes. protr and wasserportal are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is protr better than wasserportal?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. protr and wasserportal are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.
What are the best alternatives to wasserportal?
Top wasserportal alternatives in Analytics are ranked by recent ship velocity. Browse the "wasserportal alternatives" section above for the current picks, or visit /alternatives/wasserportal for the full list with editorial commentary on each.