paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
protr vs rjdqa
A side-by-side editorial comparison of protr and rjdqa — release velocity, themes, recent moves, and the top alternatives to consider.
protr vs rjdqa: at a glance
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
What is rjdqa?
rjdqa keeps refining one screen: the seasonal adjustment quality dashboard
rjdqa builds quality assessment dashboards for seasonal adjustment models produced by JDemetra+, aimed at official statisticians reviewing adjusted series. Essentially all development goes into two functions, simple_dashboard() and its denser variant simple_dashboard2(). Version 0.1.6 adds parameters to append observations to the forecast and to control whether the residual trading-days test is printed, defaulting to monthly series only, plus outlier table layout work and user-defined calendar regressor support in sc_dashboard().
protr vs rjdqa: editorial side-by-side
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
rjdqa
0.0ANALYTICS
rjdqa keeps refining one screen: the seasonal adjustment quality dashboard
◆ Current state
rjdqa builds quality assessment dashboards for seasonal adjustment models produced by JDemetra+, aimed at official statisticians reviewing adjusted series. Essentially all development goes into two functions, simple_dashboard() and its denser variant simple_dashboard2(). Version 0.1.6 adds parameters to append observations to the forecast and to control whether the residual trading-days test is printed, defaulting to monthly series only, plus outlier table layout work and user-defined calendar regressor support in sc_dashboard().
◆ Where it's heading
The package has converged on a single deliverable and is tuning it against reviewer practice. Each release adds a parameter that lets the analyst include or exclude one element of the dashboard, or adjusts how densely information is packed into the fixed space of the layout. The td_effect default — print the test only for monthly series — is characteristic: the knowledge about when a diagnostic is meaningful is being encoded into the tool rather than left to the reader.
◆ Prediction
The pattern of adding one toggle per diagnostic per release points at the same thing again, most likely another test given a conditional default, rather than a new dashboard function alongside the two that exist.
Alternatives to protr and rjdqa
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either protr or rjdqa.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
Recent activity from protr and rjdqa
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 9mo agorjdqaForecast observations and conditional trading-days test in dashboards
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agorjdqaFix tail() usage on ts objects
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agorjdqaFix dependency minimums and outlier ordering
- 2y agorjdqasimple_dashboard2() added; deprecated sa_dashboard() removed
- 2y agorjdqasimple_dashboard() introduced; sa_dashboard() deprecated
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 7y agorjdqaFirst CRAN release
Frequently asked questions
What is the difference between protr and rjdqa?
They serve adjacent needs but don't currently overlap on shipped themes. protr and rjdqa are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is protr better than rjdqa?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. protr and rjdqa are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.
What are the best alternatives to rjdqa?
Top rjdqa alternatives in Analytics are ranked by recent ship velocity. Browse the "rjdqa alternatives" section above for the current picks, or visit /alternatives/rjdqa-r for the full list with editorial commentary on each.