paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
paletteer vs protr
A side-by-side editorial comparison of paletteer and protr — release velocity, themes, recent moves, and the top alternatives to consider.
paletteer vs protr: at a glance
What is paletteer?
A palette aggregator that grows by absorbing other packages, not by changing shape
paletteer collects colour palettes from across the R ecosystem behind one consistent interface, so users can reference any of them by a single name rather than installing each source package. Its function surface has been essentially fixed for years; what changes each release is the catalogue. Version 1.7.0 pulls in palettes from ButterflyColors, feathers, ggsci, khroma, PrettyCols, tayloRswift, blueycolors, amerika, Rdune and poisonfrogs, and tightens argument checking.
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
paletteer vs protr: editorial side-by-side
paletteer
0.0ANALYTICS
A palette aggregator that grows by absorbing other packages, not by changing shape
◆ Current state
paletteer collects colour palettes from across the R ecosystem behind one consistent interface, so users can reference any of them by a single name rather than installing each source package. Its function surface has been essentially fixed for years; what changes each release is the catalogue. Version 1.7.0 pulls in palettes from ButterflyColors, feathers, ggsci, khroma, PrettyCols, tayloRswift, blueycolors, amerika, Rdune and poisonfrogs, and tightens argument checking.
◆ Where it's heading
This is a catalogue, and catalogues grow by ingestion. Every substantive release since 1.3.0 is a list of source packages absorbed, in batches of tens to low hundreds of palettes, with occasional maintenance on the metadata tables that describe them. Release cadence follows contributor pull requests rather than any internal roadmap — roughly one release every one to two years, each bundling whatever accumulated.
◆ Prediction
Expect the same: another release when enough new source packages have been proposed, likely paired with further work on palettes_c_names and palettes_d_names, the only part of the package that has been iterated on for its own sake.
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
Alternatives to paletteer and protr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either paletteer or protr.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all paletteer alternatives → · See all protr alternatives →
Recent activity from paletteer and protr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 7mo agopaletteerTen more source packages absorbed; argument checking tightened
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agopaletteerRoughly 170 palettes added from seven art and design packages
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
- 3y agopaletteerMetBrewer, NatParksPalettes and six more sources added
- 4y agopaletteerHTML5-friendly documentation fix
- 5y agopaletteerggprism and nbapalettes added; palette metadata enriched
- 5y agopaletteersoilpalettes, rockthemes and Manu palettes added
Frequently asked questions
What is the difference between paletteer and protr?
They serve adjacent needs but don't currently overlap on shipped themes. paletteer and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is paletteer better than protr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. paletteer and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to paletteer?
Top paletteer alternatives in Analytics are ranked by recent ship velocity. Browse the "paletteer alternatives" section above for the current picks, or visit /alternatives/paletteer-r for the full list with editorial commentary on each.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.