OHPL
A 2017 chemometrics method frozen in place, visited only when CRAN changes its documentation rules.
Comparison · Analytics
OneSampleMR vs vegan
A side-by-side editorial comparison of OneSampleMR and vegan — release velocity, themes, recent moves, and the top alternatives to consider.
OneSampleMR vs vegan: at a glance
What is OneSampleMR?
OneSampleMR found that argument order in a formula was silently changing its estimates
OneSampleMR implements one-sample Mendelian randomization estimators — two-stage predictor substitution, two-stage residual inclusion, and Sanderson-Windmeijer conditional F statistics for instrument strength. The package spent its first years on packaging and dependency upkeep. The 2026 releases turn to substance: broader support for models fitted elsewhere, then a correctness fix for a defect that depended on nothing more than where covariates appeared in a formula.
What is vegan?
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
OneSampleMR vs vegan: editorial side-by-side
OneSampleMR
0.0ANALYTICS
OneSampleMR found that argument order in a formula was silently changing its estimates
◆ Current state
OneSampleMR implements one-sample Mendelian randomization estimators — two-stage predictor substitution, two-stage residual inclusion, and Sanderson-Windmeijer conditional F statistics for instrument strength. The package spent its first years on packaging and dependency upkeep. The 2026 releases turn to substance: broader support for models fitted elsewhere, then a correctness fix for a defect that depended on nothing more than where covariates appeared in a formula.
◆ Where it's heading
Two threads. The first is reach — fsw() now reads models fitted by AER::ivreg(), estimatr::iv_robust() and fixest::feols() in addition to ivreg::ivreg(), which makes conditional F statistics available without refitting in the package's own idiom. The second is hardening: clear errors when more than one exposure is given or when a variable collides with the reserved name y, and print methods that no longer fail on user-specified t0 with log or logit links. Both come largely from user reports rather than a plan.
◆ Prediction
The estimator-support work has been adding one IV-fitting package at a time on outside contributions, so further backends are the likeliest next content — the package's own estimators have been stable since first release.
vegan
0.0ANALYTICS
Community ecology's standard toolkit is retiring the functions a generation of scripts was built on.
◆ Current state
vegan is the reference R package for ordination and diversity analysis in community ecology. The 2.7 line redesigned constrained ordination graphics from scratch, made adonis defunct in favor of adonis2, and moved permutation tests for partial RDA and db-RDA onto residualized predictors. The current 2.7-5 release is stabilization — parallel processing on Windows, ggvegan compatibility for tidy scores, and arrow label placement.
◆ Where it's heading
Two long deprecation programs are converging. Plotting is being pushed out of the package: lattice functions are deprecated in favor of ggplot2 equivalents now living in ggvegan, a separate CRAN package, while vegan's own base graphics were rebuilt around independently configurable score types and pipe-based construction. Meanwhile the statistical core is being made internally consistent — add1 and drop1 no longer use different internal models, and summary is no longer an accepted route to ordination scores.
◆ Prediction
Expect the remaining lattice functions to go defunct and more plotting responsibility to shift to ggvegan, leaving vegan as the statistical engine with a thin base graphics layer.
Alternatives to OneSampleMR and vegan
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either OneSampleMR or vegan.
fastplyr
A fast dplyr stand-in that keeps finding new places to skip work entirely.
trias
Belgium's invasive-species indicator toolkit is in steady refinement, one plotting edge case at a time.
icesSAG
The ICES stock assessment client took upload away in 2024 and spent two years giving it back.
dggridR
A discrete global grid generator grew cell traversal and became a usable spatial index.
ichimoku
A cloud-chart package quietly swapping its dependencies for its maintainer's own libraries.
See all OneSampleMR alternatives → · See all vegan alternatives →
Recent activity from OneSampleMR and vegan
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoOneSampleMROneSampleMR fixes estimates broken by covariate order in the formula
- 2mo agoveganParallel processing stabilized, especially on Windows
- 5mo agoOneSampleMROneSampleMR computes conditional F for three more IV packages
- 5mo agoveganLattice plotting deprecated as ggvegan reaches CRAN
- 10mo agoveganPartial RDA permutation tests adopt residualized predictors
- 1y agoveganOrdination graphics rebuilt and adonis made defunct ⚡
- 1y agoOneSampleMROneSampleMR 0.1.6
- 1y agoveganRelease chasing undefined behavior in a C function
- 1y agoveganpca, ca and pco added for unconstrained ordination
- 2y agoOneSampleMROneSampleMR 0.1.5
- 2y agoOneSampleMROneSampleMR 0.1.4
- 3y agoOneSampleMROneSampleMR 0.1.3
Frequently asked questions
What is the difference between OneSampleMR and vegan?
They serve adjacent needs but don't currently overlap on shipped themes. OneSampleMR and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is OneSampleMR better than vegan?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. OneSampleMR and vegan are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to OneSampleMR?
Top OneSampleMR alternatives in Analytics are ranked by recent ship velocity. Browse the "OneSampleMR alternatives" section above for the current picks, or visit /alternatives/onesamplemr for the full list with editorial commentary on each.
What are the best alternatives to vegan?
Top vegan alternatives in Analytics are ranked by recent ship velocity. Browse the "vegan alternatives" section above for the current picks, or visit /alternatives/vegan-r for the full list with editorial commentary on each.