TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
Comparison · Analytics
omock vs qtl
A side-by-side editorial comparison of omock and qtl — release velocity, themes, recent moves, and the top alternatives to consider.
omock vs qtl: at a glance
What is omock?
A mock-data generator for OMOP studies that keeps widening what it can fake.
omock builds synthetic OMOP Common Data Model tables so packages in the darwin-eu and OHDSI ecosystem can be tested without touching patient data. The 0.7.0 release adds concept set subsetting with its own vignette, unit and value support in mockMeasurement, observation date validation and cohort attrition initialization, while deprecating mockConcepts. Releases arrive as PR digests rather than written notes.
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
omock vs qtl: editorial side-by-side
omock
0.0ANALYTICS
A mock-data generator for OMOP studies that keeps widening what it can fake.
◆ Current state
omock builds synthetic OMOP Common Data Model tables so packages in the darwin-eu and OHDSI ecosystem can be tested without touching patient data. The 0.7.0 release adds concept set subsetting with its own vignette, unit and value support in mockMeasurement, observation date validation and cohort attrition initialization, while deprecating mockConcepts. Releases arrive as PR digests rather than written notes.
◆ Where it's heading
The package has been moving from generating tables to shipping and managing reference datasets — mockDatasets arrived in 0.4.0, mockCdmFromDataset gained a source argument in 0.5.0, and 0.6.1 added download retry handling plus an internal GiBleed dataset after the hosted files moved. The recent work is filling in CDM fidelity: type concepts, measurement units, attrition, and guards for degenerate cases like an empty person table.
◆ Prediction
Expect coverage to keep extending table by table toward the parts of the CDM that omock still cannot mock, with mockConcepts removed outright once the concept set subsetting path settles.
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
Alternatives to omock and qtl
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either omock or qtl.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
rjdqa
rjdqa keeps refining one screen: the seasonal adjustment quality dashboard
epikit
epikit narrows to field-epidemiology helpers, handing proportions to a sibling package
SimInf
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
Recent activity from omock and qtl
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoomockConcept set subsetting and richer measurement mocks
- 4mo agoomockDelphi dataset added and CDM version bumped
- 6mo agoomockDataset downloads survive the storage move
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 11mo agoomockJOSS submission tag alongside the 0.5.0 release
- 11mo agoomockmockCdmFromDataset gains a source argument
- 1y agoomockmockDatasets introduces bundled reference data
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between omock and qtl?
They serve adjacent needs but don't currently overlap on shipped themes. omock and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is omock better than qtl?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. omock and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to omock?
Top omock alternatives in Analytics are ranked by recent ship velocity. Browse the "omock alternatives" section above for the current picks, or visit /alternatives/omock-r for the full list with editorial commentary on each.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.