paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
cairo vs qtl
A side-by-side editorial comparison of cairo and qtl — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:maintenance
cairo vs qtl: at a glance
What is cairo?
Cairo finally catches R's graphics engine, all the way to GE API 16.
Cairo is the R device that renders plots through the cairo library, and until 1.7-0 it lagged R's own graphics engine by several API generations. That release closes the gap to GE API 16 (R 4.5.0), adding fill patterns, masks and groups. The releases before it were maintenance: a segfault shim for grid, a bashism removal in configure, and Windows font and build fixes.
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
cairo vs qtl: editorial side-by-side
cairo
0.0ANALYTICS
Cairo finally catches R's graphics engine, all the way to GE API 16.
◆ Current state
Cairo is the R device that renders plots through the cairo library, and until 1.7-0 it lagged R's own graphics engine by several API generations. That release closes the gap to GE API 16 (R 4.5.0), adding fill patterns, masks and groups. The releases before it were maintenance: a segfault shim for grid, a bashism removal in configure, and Windows font and build fixes.
◆ Where it's heading
The arc is catch-up, executed one API generation at a time. Glyph rendering arrived in 1.6-3, GE 15 stubs in 1.6-5 existed only to stop grid from segfaulting, and 1.7-0 delivers the real GE 13/14/16 feature set rather than placeholders. Alongside that, dropping the CAIROGD_VER C API and the mkdist step means the package now builds with plain R CMD build, which reads as deliberate reduction of maintenance overhead.
◆ Prediction
Expect the next releases to be corrective rather than additive: the entries show every API adoption here has been followed by a fix release, and patterns, masks and groups are a much larger surface than glyphs were.
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
Alternatives to cairo and qtl
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cairo or qtl.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
Recent activity from cairo and qtl
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 9mo agocairoCairo adds fill patterns, masks and groups (GE API 16) ⚡
- 11mo agocairoCairo 1.6-4: configure cleanup, locatorBell dropped on X11
- 11mo agocairoCairo 1.6-5 stubs GE 15 to stop grid segfaulting
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agocairoCairo 1.6-2
- 2y agocairoCairo 1.6-3 adds glyph rendering for grid.glyph()
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between cairo and qtl?
Both compete on the same themes — maintenance — within Analytics. cairo and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is cairo better than qtl?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cairo and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to cairo?
Top cairo alternatives in Analytics are ranked by recent ship velocity. Browse the "cairo alternatives" section above for the current picks, or visit /alternatives/cairo-r for the full list with editorial commentary on each.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.