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Comparison · Analytics
NWCTrends vs qtl
A side-by-side editorial comparison of NWCTrends and qtl — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
NWCTrends vs qtl: at a glance
What is NWCTrends?
The salmon status-review trend package, maintained one federal review cycle at a time
NWCTrends fits multivariate state-space trend models to Pacific salmon population data and generates the tables and figures used in NOAA Northwest Fisheries Science Center viability and status reviews. Its release history maps onto those review cycles rather than a development calendar: v1.0 carries the 2015 review code, v1.25 the 2020 review, v1.30 the changes since. The 2026 v1.31 is internal restructuring and a dependency swap.
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
NWCTrends vs qtl: editorial side-by-side
NWCTrends
0.0ANALYTICS
The salmon status-review trend package, maintained one federal review cycle at a time
◆ Current state
NWCTrends fits multivariate state-space trend models to Pacific salmon population data and generates the tables and figures used in NOAA Northwest Fisheries Science Center viability and status reviews. Its release history maps onto those review cycles rather than a development calendar: v1.0 carries the 2015 review code, v1.25 the 2020 review, v1.30 the changes since. The 2026 v1.31 is internal restructuring and a dependency swap.
◆ Where it's heading
Development is driven by reproducibility of a specific government reporting product, so most work goes into making the report generation configurable and the fitting assumptions explicit rather than into new modelling. The 2020 cycle removed hard-coded per-population hacks and made the fitting window an explicit argument; the 2023 cycle moved plot styling into package options and clarified how missing data and zeros are handled in the published tables.
◆ Prediction
The cadence suggests the next substantive release arrives with the next status review rather than before it, most likely continuing the move of report parameters out of function signatures and into structured configuration.
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
Alternatives to NWCTrends and qtl
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either NWCTrends or qtl.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all NWCTrends alternatives → · See all qtl alternatives →
Recent activity from NWCTrends and qtl
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 7mo agoNWCTrendsReport params extracted to a list; gdata replaced with readxl
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoNWCTrendsPlot options move into package globals; figure data exported to CSV
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
- 5y agoNWCTrendsExplicit fitting window replaces implicit full-data fits
- 5y agoNWCTrendsInitial release packaging the 2015 status review code
Frequently asked questions
What is the difference between NWCTrends and qtl?
Both compete on the same themes — r-package — within Analytics. NWCTrends and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is NWCTrends better than qtl?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. NWCTrends and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to NWCTrends?
Top NWCTrends alternatives in Analytics are ranked by recent ship velocity. Browse the "NWCTrends alternatives" section above for the current picks, or visit /alternatives/nwctrends-r for the full list with editorial commentary on each.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.