qqman
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
Comparison · Analytics
gtfstools vs shapviz
A side-by-side editorial comparison of gtfstools and shapviz — release velocity, themes, recent moves, and the top alternatives to consider.
gtfstools vs shapviz: at a glance
What is gtfstools?
gtfstools stopped guarding its own object model and started accepting everyone else's.
gtfstools reads, edits, filters and validates GTFS public transport feeds in R on a data.table backend. Since 1.3.0 it accepts GTFS objects produced by other packages such as gtfsio and tidytransit, converting them through an as_dt_gtfs() generic. Validation runs MobilityData's canonical validator, now supported through v6.0.0.
What is shapviz?
shapviz refines its SHAP plots release by release while chasing ggplot2's moving target.
shapviz turns SHAP values from XGBoost, LightGBM, H2O, kernelshap and other sources into standard diagnostic plots — importance, dependence, waterfall, force and interaction. Recent work is plot ergonomics: shared y-axis control across dependence plots, a bar view for interaction values, and axis collection via patchwork. The two most recent releases are pure compatibility and bug fixes.
gtfstools vs shapviz: editorial side-by-side
gtfstools
0.0ANALYTICS
gtfstools stopped guarding its own object model and started accepting everyone else's.
◆ Current state
gtfstools reads, edits, filters and validates GTFS public transport feeds in R on a data.table backend. Since 1.3.0 it accepts GTFS objects produced by other packages such as gtfsio and tidytransit, converting them through an as_dt_gtfs() generic. Validation runs MobilityData's canonical validator, now supported through v6.0.0.
◆ Where it's heading
The package built out a wide function surface first — filters, geometry conversion, speed and duration calculations — then turned outward. Delegating validation to MobilityData's validator and accepting other packages' objects both trade self-sufficiency for a position inside the wider GTFS ecosystem. Deprecations are handled slowly, with old behaviour left as the default for a release or more.
◆ Prediction
Expect continued validator version tracking and further completion of the deprecation cycle around filter_by_stop_id()'s full_trips behaviour.
shapviz
0.0ANALYTICS
shapviz refines its SHAP plots release by release while chasing ggplot2's moving target.
◆ Current state
shapviz turns SHAP values from XGBoost, LightGBM, H2O, kernelshap and other sources into standard diagnostic plots — importance, dependence, waterfall, force and interaction. Recent work is plot ergonomics: shared y-axis control across dependence plots, a bar view for interaction values, and axis collection via patchwork. The two most recent releases are pure compatibility and bug fixes.
◆ Where it's heading
Two threads run in parallel here. One is visual refinement converging on conventions from Python's shap — the 0.10.0 notes openly float switching share_y to TRUE to match it. The other is connector maintenance, keeping pace with H2O, XGBoost 1.x and 2.x, shapr and permshap as each changes. Neither thread adds new explanation methods; shapviz's job is presentation, and it is being polished rather than extended.
◆ Prediction
Expect share_y = TRUE to become the default and further ggplot2 4.x fallout, with connector updates arriving as the upstream SHAP packages release.
Alternatives to gtfstools and shapviz
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either gtfstools or shapviz.
constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
See all gtfstools alternatives → · See all shapviz alternatives →
Recent activity from gtfstools and shapviz
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 10mo agoshapvizggplot 4.0 compatibility fix
- 1y agoshapvizFixes duplicated bars in sv_interaction()
- 1y agoshapvizggplot2 and patchwork dependency bumps
- 1y agoshapvizShared y-axis control and bar-style interaction plots
- 1y agoshapvizH2O random forests gain TreeSHAP support
- 1y agogtfstoolsSupports canonical GTFS validator v5 and v6
- 1y agoshapvizFixes a broken vignette link
- 1y agogtfstoolsAccepts GTFS objects from gtfsio and tidytransit ⚡
- 3y agogtfstoolsValidation delegated to MobilityData's canonical validator
- 4y agogtfstoolsAdds time-of-day, weekday and frequency filtering functions
- 4y agogtfstoolsEstablishes the core GTFS filtering and sf conversion family
Frequently asked questions
What is the difference between gtfstools and shapviz?
They serve adjacent needs but don't currently overlap on shipped themes. gtfstools and shapviz are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is gtfstools better than shapviz?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. gtfstools and shapviz are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to gtfstools?
Top gtfstools alternatives in Analytics are ranked by recent ship velocity. Browse the "gtfstools alternatives" section above for the current picks, or visit /alternatives/gtfstools-r for the full list with editorial commentary on each.
What are the best alternatives to shapviz?
Top shapviz alternatives in Analytics are ranked by recent ship velocity. Browse the "shapviz alternatives" section above for the current picks, or visit /alternatives/shapviz for the full list with editorial commentary on each.