constants
The R package for CODATA constants rebuilt its symbol table on NIST's naming so future updates stop being hand work.
Comparison · Analytics
qqman vs shapviz
A side-by-side editorial comparison of qqman and shapviz — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:visualization
qqman vs shapviz: at a glance
What is qqman?
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.
What is shapviz?
shapviz refines its SHAP plots release by release while chasing ggplot2's moving target.
shapviz turns SHAP values from XGBoost, LightGBM, H2O, kernelshap and other sources into standard diagnostic plots — importance, dependence, waterfall, force and interaction. Recent work is plot ergonomics: shared y-axis control across dependence plots, a bar view for interaction values, and axis collection via patchwork. The two most recent releases are pure compatibility and bug fixes.
qqman vs shapviz: editorial side-by-side
qqman
0.0ANALYTICS
The Manhattan-plot package for GWAS results, finished and dormant since 2017.
◆ Current state
qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.
◆ Where it's heading
The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.
◆ Prediction
With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.
shapviz
0.0ANALYTICS
shapviz refines its SHAP plots release by release while chasing ggplot2's moving target.
◆ Current state
shapviz turns SHAP values from XGBoost, LightGBM, H2O, kernelshap and other sources into standard diagnostic plots — importance, dependence, waterfall, force and interaction. Recent work is plot ergonomics: shared y-axis control across dependence plots, a bar view for interaction values, and axis collection via patchwork. The two most recent releases are pure compatibility and bug fixes.
◆ Where it's heading
Two threads run in parallel here. One is visual refinement converging on conventions from Python's shap — the 0.10.0 notes openly float switching share_y to TRUE to match it. The other is connector maintenance, keeping pace with H2O, XGBoost 1.x and 2.x, shapr and permshap as each changes. Neither thread adds new explanation methods; shapviz's job is presentation, and it is being polished rather than extended.
◆ Prediction
Expect share_y = TRUE to become the default and further ggplot2 4.x fallout, with connector updates arriving as the upstream SHAP packages release.
Alternatives to qqman and shapviz
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qqman or shapviz.
austraits
The R client for AusTraits spends its releases chasing the dataset it reads.
ggdemetra
A ggplot2 layer for seasonal adjustment output, filling in one plot type at a time.
fossilsim
A fossil-record simulator that quietly grew a trait-evolution engine.
tern.rbmi
Reference-based multiple imputation tables, shipping only what CRAN checks demand.
tern.mmrm
An MMRM tabulation package that has published nothing since its 2024 CRAN releases.
See all qqman alternatives → · See all shapviz alternatives →
Recent activity from qqman and shapviz
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 10mo agoshapvizggplot 4.0 compatibility fix
- 1y agoshapvizFixes duplicated bars in sv_interaction()
- 1y agoshapvizggplot2 and patchwork dependency bumps
- 1y agoshapvizShared y-axis control and bar-style interaction plots
- 1y agoshapvizH2O random forests gain TreeSHAP support
- 1y agoshapvizFixes a broken vignette link
- 9y agoqqmanREADME image path fix for pandoc
- 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
- 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
- 12y agoqqmanArchival tag for the pre-package standalone script
- 12y agoqqmanVignette touch-up
- 12y agoqqmanZenodo archival tag, no code change
Frequently asked questions
What is the difference between qqman and shapviz?
Both compete on the same themes — visualization — within Analytics. qqman and shapviz are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is qqman better than shapviz?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qqman and shapviz are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to qqman?
Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.
What are the best alternatives to shapviz?
Top shapviz alternatives in Analytics are ranked by recent ship velocity. Browse the "shapviz alternatives" section above for the current picks, or visit /alternatives/shapviz for the full list with editorial commentary on each.