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qqman vs tern.mmrm

A side-by-side editorial comparison of qqman and tern.mmrm — release velocity, themes, recent moves, and the top alternatives to consider.

qqman vs tern.mmrm: at a glance

Featureqqmantern.mmrm
SectorAnalyticsAnalytics
Velocity score0.00.0
Sparks · 30d00
Top themesgwas, genomics, manhattan-plot, visualizationpharmaverse, mmrm, tabulation, maintenance
Last editorial update49m ago1h ago
WebsiteVisit →Visit →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

What is tern.mmrm?

An MMRM tabulation package that has published nothing since its 2024 CRAN releases.

tern.mmrm wraps mixed models for repeated measures into the tern tabulation and plotting layer used by teal clinical modules. The visible history ends with three CRAN releases in mid-to-late 2024; before that the feed carries only automated version bumps from 2022, three of which have just been backfilled into the record. The most recent substantive change adds axis limit arguments to the LS-means plot.

Read the full tern.mmrm trajectory →

qqman vs tern.mmrm: editorial side-by-side

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

T
tern.mmrm
ANALYTICS
0.0

An MMRM tabulation package that has published nothing since its 2024 CRAN releases.

◆ Current state

tern.mmrm wraps mixed models for repeated measures into the tern tabulation and plotting layer used by teal clinical modules. The visible history ends with three CRAN releases in mid-to-late 2024; before that the feed carries only automated version bumps from 2022, three of which have just been backfilled into the record. The most recent substantive change adds axis limit arguments to the LS-means plot.

◆ Where it's heading

Content per release is thin and largely organisational: a maintainer change, replacing scda with random.cdisc.data in vignettes, and adapting to new {mmrm} versions. The package appears to be in maintenance, tracking its upstream dependency rather than developing independently. The 2022 entries now visible are release-automation commits, not releases in any meaningful sense.

◆ Prediction

Nothing here signals new functionality; the realistic next event is another compatibility release when {mmrm} or {rtables} changes underneath it.

Alternatives to qqman and tern.mmrm

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either qqman or tern.mmrm.

See all qqman alternatives → · See all tern.mmrm alternatives →

Recent activity from qqman and tern.mmrm

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 1y agotern.mmrmAxis limits added to the LS-means plot
  2. 2y agotern.mmrmMaintainer change and scda replaced in vignettes
  3. 2y agotern.mmrmCRAN 0.3.0 release, mostly workflow housekeeping
  4. 3y agotern.mmrmAutomated version bump to 0.2.1
  5. 3y agotern.mmrmPre-release branch merge
  6. 4y agotern.mmrmCI automation commit, no release content
  7. 9y agoqqmanREADME image path fix for pandoc
  8. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  9. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  10. 12y agoqqmanArchival tag for the pre-package standalone script
  11. 12y agoqqmanVignette touch-up
  12. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between qqman and tern.mmrm?

They serve adjacent needs but don't currently overlap on shipped themes. qqman and tern.mmrm are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is qqman better than tern.mmrm?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. qqman and tern.mmrm are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.

What are the best alternatives to tern.mmrm?

Top tern.mmrm alternatives in Analytics are ranked by recent ship velocity. Browse the "tern.mmrm alternatives" section above for the current picks, or visit /alternatives/tern-mmrm for the full list with editorial commentary on each.