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Comparison · Infra & APIs
goat vs gofedf
A side-by-side editorial comparison of goat and gofedf — release velocity, themes, recent moves, and the top alternatives to consider.
goat vs gofedf: at a glance
What is goat?
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
What is gofedf?
A two-test goodness-of-fit package opens itself up to any weight function
gofedf runs goodness-of-fit tests built on the empirical distribution function. Its three releases trace a short, clean arc: existence in 2023, then p-values computed from an analytical solution of the integral equation in 2024, then in 2026 a user-supplied weight function that replaces the fixed menu. Cramer-von Mises and Anderson-Darling are now two points in a family rather than the two options.
goat vs gofedf: editorial side-by-side
goat
0.0INFRA · APIS
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
◆ Current state
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
◆ Where it's heading
The substantive expansion happened in the 1.1 cycle; everything since has been maintenance and plotting ergonomics. Each release since 1.1 touches one function and returns something callers previously had to reconstruct, which reads as a package settling into a stable API and responding to individual user requests rather than pursuing new scope. The 13-month gap between 1.1.2 and 1.1.4 puts it firmly in low-cadence maintenance.
◆ Prediction
Expect continued point releases that expose internals from the plotting functions or refresh the bundled GO release, not new analysis capability. The entries give no signal of a planned 1.2.
gofedf
0.0INFRA · APIS
A two-test goodness-of-fit package opens itself up to any weight function
◆ Current state
gofedf runs goodness-of-fit tests built on the empirical distribution function. Its three releases trace a short, clean arc: existence in 2023, then p-values computed from an analytical solution of the integral equation in 2024, then in 2026 a user-supplied weight function that replaces the fixed menu. Cramer-von Mises and Anderson-Darling are now two points in a family rather than the two options.
◆ Where it's heading
The package is generalising rather than accumulating. Each release removed a hard-coded decision: first how eigenvalues are computed, offering both the analytical route and a matrix approximation; then which weight function defines the statistic at all. The maintainer's own framing in 1.1.0 is a contrast against what earlier versions would not let you do, which is the shape of a package aiming to become a framework.
◆ Prediction
An arbitrary weight function is the extensibility point that matters for EDF tests; what it lacks is calibration guidance, since Type I error behaviour was the argued benefit of the analytical eigenvalue route. Documented recommendations or diagnostics for user-chosen weights are the natural follow-up, though the entries do not announce one.
Alternatives to goat and gofedf
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either goat or gofedf.
PINstimation
A market-microstructure toolkit that keeps adding estimators as the papers land.
nzilbb.vowels
A vowel-analysis package trimming dependencies after an email address got it archived.
emuR
The R half of the EMU speech database system, fixing what was quietly broken.
BAS
A Bayesian model-averaging package spending its 2.0 on memory, not methods.
tidyplots
tidyplots keeps rebuilding its own foundations rather than layering around them.
Recent activity from goat and gofedf
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4mo agogofedfUser-supplied weight functions for Cramer-von Mises tests ⚡
- 6mo agogoatplot_network() now hands back the igraph object
- 1y agogofedfp-values from an analytical eigenvalue solution
- 1y agogoatFix for a reduce_genesets() infinite loop
- 1y agogoatGene sets beyond human, and analyses you can reload ⚡
- 2y agogoatFirst public release, now on CRAN ⚡
- 2y agogoatplot_lollipop() gains barplots and an effect-size axis
- 2y agogoatBeta 0.9.5 tagged, with no changes described
- 2y agogofedfFirst release of the gofedf package ⚡
Frequently asked questions
What is the difference between goat and gofedf?
They serve adjacent needs but don't currently overlap on shipped themes. goat and gofedf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is goat better than gofedf?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. goat and gofedf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to goat?
Top goat alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "goat alternatives" section above for the current picks, or visit /alternatives/goat for the full list with editorial commentary on each.
What are the best alternatives to gofedf?
Top gofedf alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "gofedf alternatives" section above for the current picks, or visit /alternatives/gofedf for the full list with editorial commentary on each.