pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
BAS vs goat
A side-by-side editorial comparison of BAS and goat — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
BAS vs goat: at a glance
What is BAS?
A Bayesian model-averaging package spending its 2.0 on memory, not methods.
BAS performs Bayesian variable selection and model averaging for linear and generalized linear models, sampling from a model space too large to enumerate. The visible history splits cleanly: 2023-2024 added sampling machinery — an adaptive independent MCMC sampler with Horvitz-Thompson estimation, hereditary-constraint counting — while 2.0.0 in late 2025 reworked how sampler output is allocated in C. The 2.0.2 patch is a PROTECT fix for rchk warnings.
What is goat?
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
BAS vs goat: editorial side-by-side
BAS
0.0INFRA · APIS
A Bayesian model-averaging package spending its 2.0 on memory, not methods.
◆ Current state
BAS performs Bayesian variable selection and model averaging for linear and generalized linear models, sampling from a model space too large to enumerate. The visible history splits cleanly: 2023-2024 added sampling machinery — an adaptive independent MCMC sampler with Horvitz-Thompson estimation, hereditary-constraint counting — while 2.0.0 in late 2025 reworked how sampler output is allocated in C. The 2.0.2 patch is a PROTECT fix for rchk warnings.
◆ Where it's heading
Memory is the binding constraint and the releases say so directly. The hereditary-constraint counter, the GROW option, and the replacement of over-allocation with resizing all attack the same problem: n.models is a guess, and guessing high wastes memory on problems where few unique models are actually visited. The 2.0.0 work was additionally forced by R tightening its C API against non-API calls like SETLENGTH, a constraint every C-heavy CRAN package has been absorbing. Method development has been quiet since 1.7.x.
◆ Prediction
The 1.7.5 notes call the hereditary-constraint counting a first step and say future updates will cover other constraint types, including polynomials, which remain unhandled. That is the one concrete commitment in this history, though nothing since has returned to it.
goat
0.0INFRA · APIS
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
◆ Current state
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
◆ Where it's heading
The substantive expansion happened in the 1.1 cycle; everything since has been maintenance and plotting ergonomics. Each release since 1.1 touches one function and returns something callers previously had to reconstruct, which reads as a package settling into a stable API and responding to individual user requests rather than pursuing new scope. The 13-month gap between 1.1.2 and 1.1.4 puts it firmly in low-cadence maintenance.
◆ Prediction
Expect continued point releases that expose internals from the plotting functions or refresh the bundled GO release, not new analysis capability. The entries give no signal of a planned 1.2.
Alternatives to BAS and goat
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either BAS or goat.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
Recent activity from BAS and goat
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 6mo agogoatplot_network() now hands back the igraph object
- 8mo agoBASBAS 2.0.2
- 8mo agoBASBAS 2.0.0
- 1y agogoatFix for a reduce_genesets() infinite loop
- 1y agogoatGene sets beyond human, and analyses you can reload ⚡
- 1y agoBASBAS 1.7.5
- 1y agoBASBAS 1.7.3
- 1y agoBASBAS 1.7.2
- 2y agogoatFirst public release, now on CRAN ⚡
- 2y agogoatplot_lollipop() gains barplots and an effect-size axis
- 2y agogoatBeta 0.9.5 tagged, with no changes described
- 2y agoBASBAS 1.7.1
Frequently asked questions
What is the difference between BAS and goat?
Both compete on the same themes — r-package — within Infra & APIs. BAS and goat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is BAS better than goat?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. BAS and goat are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to BAS?
Top BAS alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "BAS alternatives" section above for the current picks, or visit /alternatives/bas for the full list with editorial commentary on each.
What are the best alternatives to goat?
Top goat alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "goat alternatives" section above for the current picks, or visit /alternatives/goat for the full list with editorial commentary on each.