pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
ggalign vs rstudio.prefs
A side-by-side editorial comparison of ggalign and rstudio.prefs — release velocity, themes, recent moves, and the top alternatives to consider.
ggalign vs rstudio.prefs: at a glance
What is ggalign?
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
ggalign composes multiple ggplots against a shared observation ordering, covering heatmap annotation, oncoplots, phylogenies and circular layouts. Releases have come roughly monthly through 2025, first completing the layout system, then migrating the internals to S7 and absorbing the ggplot2 4.0 changes. The alignment machinery is now exported for other packages to build on.
What is rstudio.prefs?
Four years dormant, rstudio.prefs returns under a new maintainer.
The package scripts RStudio's own settings — preferences, secondary repositories, keyboard shortcuts — as code you can drop into a project or an onboarding doc. After 0.1.9 in July 2022 it went quiet for four years. 0.2.0 ends that with a maintainer handoff from Daniel D. Sjoberg to S.A. van der Wulp, a shortcut-removal path, and a fix for a corrupted addins.json entry that made reassigned shortcuts fail silently.
ggalign vs rstudio.prefs: editorial side-by-side
ggalign
0.0INFRA · APIS
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
◆ Current state
ggalign composes multiple ggplots against a shared observation ordering, covering heatmap annotation, oncoplots, phylogenies and circular layouts. Releases have come roughly monthly through 2025, first completing the layout system, then migrating the internals to S7 and absorbing the ggplot2 4.0 changes. The alignment machinery is now exported for other packages to build on.
◆ Where it's heading
Two threads run in parallel. One widens what can be aligned, with sector facets, ideograms, image point shapes and observation linking. The other keeps rebuilding the foundation, with the S7 migration, repeated renames toward consistent naming, and the deliberate handing of element_polygon() and element_curve() upstream to ggplot2. The renaming is aggressive enough that each recent release soft-deprecates something.
◆ Prediction
With the internals on S7 and the Patch object exported, the next step is most likely stabilising those names rather than another refactor.
rstudio.prefs
2.5INFRA · APIS
Four years dormant, rstudio.prefs returns under a new maintainer.
◆ Current state
The package scripts RStudio's own settings — preferences, secondary repositories, keyboard shortcuts — as code you can drop into a project or an onboarding doc. After 0.1.9 in July 2022 it went quiet for four years. 0.2.0 ends that with a maintainer handoff from Daniel D. Sjoberg to S.A. van der Wulp, a shortcut-removal path, and a fix for a corrupted addins.json entry that made reassigned shortcuts fail silently.
◆ Where it's heading
The through-line is teaching every setter how to unset. Secondary repositories got NULL removal back in 0.1.6; 0.2.0 extends the same convention to keyboard shortcuts. Most of the rest of 0.2.0 is arrears — a stale documentation URL that hid preferences such as enable_splash_screen, a deprecated purrr::update_list() call, and check_shortcut_consistency() erroring early on an unknown name.
◆ Prediction
With a new maintainer and refreshed GitHub Actions, the near-term work is likely more catch-up of the same kind: remaining deprecated dependencies and the preference list that fetch_rstudio_prefs() reads from RStudio's docs. Nothing in these notes points past RStudio settings as the scope.
Alternatives to ggalign and rstudio.prefs
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ggalign or rstudio.prefs.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
See all ggalign alternatives → · See all rstudio.prefs alternatives →
Recent activity from ggalign and rstudio.prefs
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 10h agorstudio.prefsShortcut removal, an addins.json fix, and a new maintainer
- 10mo agoggalignalignpatch internals moved to S7; Patch object exported
- 11mo agoggalignInternals migrated to S7; ideogram, tags and image shapes
- 1y agoggalignz aesthetic scales and guide collection in borders
- 1y agoggalignchannelGrob() draws across facets; ggplot2 3.5.2 fix
- 1y agoggalignLayout system declared complete; polar facets and coord_circle()
- 1y agoggalignLayouts split into discrete and continuous; linking system added ⚡
- 4y agorstudio.prefsPreferences now read and written through rstudioapi
- 4y agorstudio.prefsConfig files left alone when nothing would change
- 4y agorstudio.prefsSecondary repositories can be deleted again
- 4y agorstudio.prefsRepository removal via NULL; config path helpers exported
- 5y agorstudio.prefsDocumentation, error messages, and array-type caution
Frequently asked questions
What is the difference between ggalign and rstudio.prefs?
They serve adjacent needs but don't currently overlap on shipped themes. rstudio.prefs is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ggalign better than rstudio.prefs?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. rstudio.prefs is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to ggalign?
Top ggalign alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "ggalign alternatives" section above for the current picks, or visit /alternatives/ggalign for the full list with editorial commentary on each.
What are the best alternatives to rstudio.prefs?
Top rstudio.prefs alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "rstudio.prefs alternatives" section above for the current picks, or visit /alternatives/rstudio-prefs for the full list with editorial commentary on each.