pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
jSDM vs rstudio.prefs
A side-by-side editorial comparison of jSDM and rstudio.prefs — release velocity, themes, recent moves, and the top alternatives to consider.
jSDM vs rstudio.prefs: at a glance
What is jSDM?
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
What is rstudio.prefs?
Four years dormant, rstudio.prefs returns under a new maintainer.
The package scripts RStudio's own settings — preferences, secondary repositories, keyboard shortcuts — as code you can drop into a project or an onboarding doc. After 0.1.9 in July 2022 it went quiet for four years. 0.2.0 ends that with a maintainer handoff from Daniel D. Sjoberg to S.A. van der Wulp, a shortcut-removal path, and a fix for a corrupted addins.json entry that made reassigned shortcuts fail silently.
jSDM vs rstudio.prefs: editorial side-by-side
jSDM
0.0INFRA · APIS
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
◆ Current state
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
◆ Where it's heading
The package built out its model family quickly and then stopped: five of the six visible entries are stamped the same day as a backfilled archive, and the only later release says nothing about its contents. The direction the 0.2 line was heading, toward trait-mediated species effects and better convergence on latent variable models, has no visible continuation.
◆ Prediction
The feed does not support a confident prediction; the latest entry publishes no notes, so whether the package is still developing or only being kept CRAN-clean cannot be read from it.
rstudio.prefs
2.5INFRA · APIS
Four years dormant, rstudio.prefs returns under a new maintainer.
◆ Current state
The package scripts RStudio's own settings — preferences, secondary repositories, keyboard shortcuts — as code you can drop into a project or an onboarding doc. After 0.1.9 in July 2022 it went quiet for four years. 0.2.0 ends that with a maintainer handoff from Daniel D. Sjoberg to S.A. van der Wulp, a shortcut-removal path, and a fix for a corrupted addins.json entry that made reassigned shortcuts fail silently.
◆ Where it's heading
The through-line is teaching every setter how to unset. Secondary repositories got NULL removal back in 0.1.6; 0.2.0 extends the same convention to keyboard shortcuts. Most of the rest of 0.2.0 is arrears — a stale documentation URL that hid preferences such as enable_splash_screen, a deprecated purrr::update_list() call, and check_shortcut_consistency() erroring early on an unknown name.
◆ Prediction
With a new maintainer and refreshed GitHub Actions, the near-term work is likely more catch-up of the same kind: remaining deprecated dependencies and the preference list that fetch_rstudio_prefs() reads from RStudio's docs. Nothing in these notes points past RStudio settings as the scope.
Alternatives to jSDM and rstudio.prefs
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either jSDM or rstudio.prefs.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
See all jSDM alternatives → · See all rstudio.prefs alternatives →
Recent activity from jSDM and rstudio.prefs
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 10h agorstudio.prefsShortcut removal, an addins.json fix, and a new maintainer
- 9mo agojSDMjSDM CRAN release v0.2.7: Joint Species Distribution Models
- 3y agojSDMSpecies traits, constrained loadings and association plots
- 3y agojSDMFirst release: C++ Gibbs sampler for joint species models ⚡
- 3y agojSDMResidual correlation functions can filter to significant values
- 3y agojSDMjSDM_gaussian() fits continuous data with overdispersion
- 3y agojSDMFour versions of CRAN check corrections
- 4y agorstudio.prefsPreferences now read and written through rstudioapi
- 4y agorstudio.prefsConfig files left alone when nothing would change
- 4y agorstudio.prefsSecondary repositories can be deleted again
- 4y agorstudio.prefsRepository removal via NULL; config path helpers exported
- 5y agorstudio.prefsDocumentation, error messages, and array-type caution
Frequently asked questions
What is the difference between jSDM and rstudio.prefs?
They serve adjacent needs but don't currently overlap on shipped themes. rstudio.prefs is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is jSDM better than rstudio.prefs?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. rstudio.prefs is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to jSDM?
Top jSDM alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jSDM alternatives" section above for the current picks, or visit /alternatives/jsdm for the full list with editorial commentary on each.
What are the best alternatives to rstudio.prefs?
Top rstudio.prefs alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "rstudio.prefs alternatives" section above for the current picks, or visit /alternatives/rstudio-prefs for the full list with editorial commentary on each.