prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
Comparison · Infra & APIs
ggalign vs pr2database
A side-by-side editorial comparison of ggalign and pr2database — release velocity, themes, recent moves, and the top alternatives to consider.
ggalign vs pr2database: at a glance
What is ggalign?
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
ggalign composes multiple ggplots against a shared observation ordering, covering heatmap annotation, oncoplots, phylogenies and circular layouts. Releases have come roughly monthly through 2025, first completing the layout system, then migrating the internals to S7 and absorbing the ggplot2 4.0 changes. The alignment machinery is now exported for other packages to build on.
What is pr2database?
The protist reference database keeps widening past the rRNA gene it was built on.
PR2 curates ribosomal reference sequences for eukaryotes, distributed as flat files and through a web interface, with each release crediting the specialists who curated individual clades. Since 2022 the structural changes have outweighed the curation: one combined SSU database replaced the separate ones, the taxonomy moved from eight levels to nine, and companion databases for ribosomal operons, mixoplankton and mitochondrial COI have been linked in.
ggalign vs pr2database: editorial side-by-side
ggalign
0.0INFRA · APIS
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
◆ Current state
ggalign composes multiple ggplots against a shared observation ordering, covering heatmap annotation, oncoplots, phylogenies and circular layouts. Releases have come roughly monthly through 2025, first completing the layout system, then migrating the internals to S7 and absorbing the ggplot2 4.0 changes. The alignment machinery is now exported for other packages to build on.
◆ Where it's heading
Two threads run in parallel. One widens what can be aligned, with sector facets, ideograms, image point shapes and observation linking. The other keeps rebuilding the foundation, with the S7 migration, repeated renames toward consistent naming, and the deliberate handing of element_polygon() and element_curve() upstream to ggplot2. The renaming is aggressive enough that each recent release soft-deprecates something.
◆ Prediction
With the internals on S7 and the Patch object exported, the next step is most likely stabilising those names rather than another refactor.
pr2database
0.0INFRA · APIS
The protist reference database keeps widening past the rRNA gene it was built on.
◆ Current state
PR2 curates ribosomal reference sequences for eukaryotes, distributed as flat files and through a web interface, with each release crediting the specialists who curated individual clades. Since 2022 the structural changes have outweighed the curation: one combined SSU database replaced the separate ones, the taxonomy moved from eight levels to nine, and companion databases for ribosomal operons, mixoplankton and mitochondrial COI have been linked in.
◆ Where it's heading
The database is becoming a hub rather than a single file. Each recent release integrates something maintained elsewhere, with the ROD, EukRibo, Mixoplankton and now eKOI databases reachable through the same interface, while the SSU flat files themselves change little between versions. Curation continues underneath, clade by clade, at a pace set by which specialist contributed that cycle.
◆ Prediction
Expect the next release to integrate or refresh another linked database while the SSU files see routine curation, following the pattern of the last three.
Alternatives to ggalign and pr2database
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ggalign or pr2database.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
states
State-panel tooling holding steady since its 2020 data and ergonomics release.
See all ggalign alternatives → · See all pr2database alternatives →
Recent activity from ggalign and pr2database
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 9mo agopr2databaseeKOI mitochondrial COI database reachable from the interface
- 10mo agoggalignalignpatch internals moved to S7; Patch object exported
- 11mo agoggalignInternals migrated to S7; ideogram, tags and image shapes
- 1y agopr2databaseRibosomal Operon Database 1.2 integrated; ten clades curated
- 1y agoggalignz aesthetic scales and guide collection in borders
- 1y agoggalignchannelGrob() draws across facets; ggplot2 3.5.2 fix
- 1y agoggalignLayout system declared complete; polar facets and coord_circle()
- 1y agoggalignLayouts split into discrete and continuous; linking system added ⚡
- 2y agopr2databaseTaxonomy restructured from eight levels to nine ⚡
- 3y agopr2databaseNew web interface at app.pr2-database.org
- 4y agopr2databaseOne SSU database for nuclear, organelle and bacterial sequences ⚡
- 5y agopr2database2,966 sequences added and 3,817 removed across four clades
Frequently asked questions
What is the difference between ggalign and pr2database?
They serve adjacent needs but don't currently overlap on shipped themes. ggalign and pr2database are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ggalign better than pr2database?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ggalign and pr2database are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to ggalign?
Top ggalign alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "ggalign alternatives" section above for the current picks, or visit /alternatives/ggalign for the full list with editorial commentary on each.
What are the best alternatives to pr2database?
Top pr2database alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "pr2database alternatives" section above for the current picks, or visit /alternatives/pr2database for the full list with editorial commentary on each.