gps2gtfs
gps2gtfs spent a release making its docs stop describing functions it does not have.
Comparison · Analytics
forrel vs glyanno
A side-by-side editorial comparison of forrel and glyanno — release velocity, themes, recent moves, and the top alternatives to consider.
forrel vs glyanno: at a glance
What is forrel?
forrel is getting faster at the simulations forensic kinship work actually spends its time on.
forrel handles forensic pedigree analysis: kinship likelihood ratios, profile simulation, relationship checking, and missing person calculations. Version 1.9.0 synced with pedtools 2.11.0's loop handling, which the release notes credit with enabling complex pedigrees that were previously intractable, and moved profileSim() to mirai for parallelism. It also added fEstimate() for inbreeding coefficients and parentChildLikelihood() as a fast path for the simplest case.
What is glyanno?
Glycan annotation stops depending on the database having seen the structure before.
glyanno resolves mass spectrometry observations into glycan compositions and structures, converting between m/z, composition and structure, filling in missing detail on partial structures, and mapping results to GlyTouCan accessions. The newest release adds de novo reconstruction of topological N-glycans, falling back to the topological database only when reconstruction is not possible. Batch performance was reworked at the same time, with vector inputs reusing prepared databases and direct lookups instead of repeating setup per element.
forrel vs glyanno: editorial side-by-side
forrel
0.0ANALYTICS
forrel is getting faster at the simulations forensic kinship work actually spends its time on.
◆ Current state
forrel handles forensic pedigree analysis: kinship likelihood ratios, profile simulation, relationship checking, and missing person calculations. Version 1.9.0 synced with pedtools 2.11.0's loop handling, which the release notes credit with enabling complex pedigrees that were previously intractable, and moved profileSim() to mirai for parallelism. It also added fEstimate() for inbreeding coefficients and parentChildLikelihood() as a fast path for the simplest case.
◆ Where it's heading
Two long threads run through the window. One is making the common operations cheap: faster simulations through reorganized likelihood calculations, a dedicated parent-child path, dropped map attribute preservation, log-likelihoods to avoid underflow in kinshipLR(). The other is making relationship checking presentable, with checkPairwise() growing ggplot2 and plotly output, verbal relationship descriptions, and bootstrap p-values. Reference data is maintained alongside both, with the FORCE SNP panel completed and an X-chromosomal counterpart added.
◆ Prediction
With profileSim() on mirai and the loop handling synced, the next likely step is extending mirai parallelism to the other simulation-heavy functions such as exclusionPower() and the bootstrap in checkPairwise().
glyanno
3.8ANALYTICS
Glycan annotation stops depending on the database having seen the structure before.
◆ Current state
glyanno resolves mass spectrometry observations into glycan compositions and structures, converting between m/z, composition and structure, filling in missing detail on partial structures, and mapping results to GlyTouCan accessions. The newest release adds de novo reconstruction of topological N-glycans, falling back to the topological database only when reconstruction is not possible. Batch performance was reworked at the same time, with vector inputs reusing prepared databases and direct lookups instead of repeating setup per element.
◆ Where it's heading
The consistent theme is making ambiguous results honest and predictable. return_best moved from returning a shortened tibble to a vector aligned with the input, with NA for unmatched glycans; matching concrete compositions against a generic database now errors instead of silently returning nothing; zero-length database arguments are rejected. Alongside that, functions belonging elsewhere have been pushed down into glyrepr rather than duplicated, which is the same boundary discipline visible across this cohort. Version churn is largely driven by upstream: two of the last six entries exist to absorb breaking changes in glyrepr.
◆ Prediction
De novo reconstruction currently covers topological N-glycans only, so extending it to other structure levels or to O-glycans is the natural next step. The performance work suggests batch annotation of full experiments is now the primary use being optimised for.
Alternatives to forrel and glyanno
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either forrel or glyanno.
ducksemantics
ducksemantics puts an ontology graph and ColBERT retrieval inside DuckDB, callable from R.
dvir
dvir keeps making disaster victim identification a single call instead of a workflow.
pedbuildr
pedbuildr reconstructs pedigrees from DNA, and it just got much faster at the search.
pedFamilias
pedFamilias exists to read one legacy file format, and it has that job nearly finished.
pedmut
pedmut turns awkward mutation models into ones the likelihood engine can actually handle.
See all forrel alternatives → · See all glyanno alternatives →
Recent activity from forrel and glyanno
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 24d agoglyannoDe novo reconstruction of topological N-glycans, with database fallback ⚡
- 1mo agoforrelmirai parallelism and faster profile simulation
- 3mo agoglyannoGlyTouCan accession mapping and anomeric position filling
- 3mo agoglyannoFixes an enhance_struc() break from glyrepr 0.11.0
- 4mo agoglyannoExplicit empty return from com_to_struc()
- 4mo agoglyannoreturn_best output aligns with input length; silent empty matches now error
- 5mo agoglyannoto_level parameter removed from enhance_struc()
- 1y agoforrelFORCE SNP panel completed and X-chromosomal set added
- 1y agoforrelrankProfiles() and access to special lumping
- 1y agoforrelacrossComps argument and readFam() unexported
- 1y agoforrelcheckPairwise() overhauled with p-values and new plot backends
- 2y agoforrelFamilias interoperability split into pedFamilias
Frequently asked questions
What is the difference between forrel and glyanno?
They serve adjacent needs but don't currently overlap on shipped themes. glyanno is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is forrel better than glyanno?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. glyanno is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to forrel?
Top forrel alternatives in Analytics are ranked by recent ship velocity. Browse the "forrel alternatives" section above for the current picks, or visit /alternatives/forrel for the full list with editorial commentary on each.
What are the best alternatives to glyanno?
Top glyanno alternatives in Analytics are ranked by recent ship velocity. Browse the "glyanno alternatives" section above for the current picks, or visit /alternatives/glyanno for the full list with editorial commentary on each.