nflreadr
The nflverse data loader, whose releases are dictated by the NFL calendar and CRAN's archive policy
Comparison · Analytics
e2tree vs rphylopic
A side-by-side editorial comparison of e2tree and rphylopic — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
e2tree vs rphylopic: at a glance
What is e2tree?
The explainable-ensemble-tree package now measures whether its own explanations are faithful.
e2tree builds a single interpretable tree that approximates a fitted ensemble, working from the proximity structure the ensemble induces between observations. The 1.0.0 release added the piece that had been missing: a Goodness of Interpretability index quantifying how well the approximating tree reconstructs the ensemble's own proximity matrix, with a permutation test for significance. Interactive visualisation and a C++ backend with OpenMP parallelism arrived alongside, and support now spans ranger and CatBoost as well as the original targets.
What is rphylopic?
The R package that puts organism silhouettes on plots keeps widening where they can be drawn.
rphylopic fetches PhyloPic silhouettes and places them into R graphics — base plots, ggplot2 layers, legends, and now phylogenetic trees and igraph networks. The 1.x line has been consistent about two things: adding a new plotting context per release, and steadily replacing its early sizing vocabulary with explicit width and height arguments. Attribution handling is unusually developed for a package this size, with permalinks and per-image credit built into the retrieval functions.
e2tree vs rphylopic: editorial side-by-side
e2tree
0.0ANALYTICS
The explainable-ensemble-tree package now measures whether its own explanations are faithful.
◆ Current state
e2tree builds a single interpretable tree that approximates a fitted ensemble, working from the proximity structure the ensemble induces between observations. The 1.0.0 release added the piece that had been missing: a Goodness of Interpretability index quantifying how well the approximating tree reconstructs the ensemble's own proximity matrix, with a permutation test for significance. Interactive visualisation and a C++ backend with OpenMP parallelism arrived alongside, and support now spans ranger and CatBoost as well as the original targets.
◆ Where it's heading
Development has moved from producing an explanation to defending it. The GoI index and its permutation test change the package's claim from here is a tree that resembles your ensemble to here is how closely it resembles it and whether that could have happened by chance — the question a reviewer asks of any surrogate model. Around that, the work is engineering: the proximity matrix construction moved from R-level parallel loops into C++ with thread-level parallelism, and recent releases have been absorbing the awkwardness of supporting multiple ensemble backends, where a multi-class CatBoost objective returns a score matrix where a vector was expected. Interactive visNetwork output and standalone HTML export point at explanations meant to be shared rather than only inspected.
◆ Prediction
Given how much recent effort has gone into per-backend adapters, expect further work on ensemble compatibility; the entries do not indicate whether the interpretability index is heading toward comparing surrogate trees against each other.
rphylopic
0.0ANALYTICS
The R package that puts organism silhouettes on plots keeps widening where they can be drawn.
◆ Current state
rphylopic fetches PhyloPic silhouettes and places them into R graphics — base plots, ggplot2 layers, legends, and now phylogenetic trees and igraph networks. The 1.x line has been consistent about two things: adding a new plotting context per release, and steadily replacing its early sizing vocabulary with explicit width and height arguments. Attribution handling is unusually developed for a package this size, with permalinks and per-image credit built into the retrieval functions.
◆ Where it's heading
Development is expanding the set of places a silhouette can appear rather than changing what the package does. Base plots came first, then ggplot2 aesthetics and legend glyphs, then trees, then network vertices via an igraph shape registered automatically when both packages load. The other running thread is defensive maintenance against upstream churn: retries on failed API calls, fixes for ggplot2 4.0.0, and now an in-memory cache so repeated calls stop hammering the PhyloPic API. The ysize and size deprecation, opened in 1.5.0, is now complete and the arguments are scheduled for removal.
◆ Prediction
The deprecated ysize and size arguments look set to be removed in the next release, and on the pattern of the last four, another plotting context is a likelier addition than a change to the retrieval layer.
Alternatives to e2tree and rphylopic
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either e2tree or rphylopic.
susier
Fine-mapping workhorse susieR spends its releases hunting null-effect trimming bugs
UCell
A rank-based gene signature scorer that has grown by adapting to whatever object format single-cell R uses next
detectseparation
A diagnostic package that generalized past its own name, then learned to say which kind of separation it found
brglm2
A bias-reduction package reaches 1.0 by adding an estimator built for high-dimensional logistic regression
bayestools
The JAGS toolkit under RoBMA, shipping the standardization machinery its downstream rewrite needed
See all e2tree alternatives → · See all rphylopic alternatives →
Recent activity from e2tree and rphylopic
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agorphylopicSilhouettes become igraph vertices; API responses cached
- 3mo agoe2treeCatBoost multi-class and loss-function handling repaired
- 4mo agoe2treeA significance-tested measure of explanation fidelity ⚡
- 8mo agorphylopicBase R phylogenies gain silhouette annotation
- 1y agoe2treeranger models supported
- 1y agorphylopicExplicit width and height replace the old sizing arguments
- 2y agorphylopicSilhouette legends and attribution permalinks
- 2y agorphylopicSilhouette resolution helper and safer colour defaults
- 2y agorphylopicRendering dependencies bumped for grImport2 and rsvg
Frequently asked questions
What is the difference between e2tree and rphylopic?
Both compete on the same themes — r-package — within Analytics. e2tree and rphylopic are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is e2tree better than rphylopic?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. e2tree and rphylopic are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to e2tree?
Top e2tree alternatives in Analytics are ranked by recent ship velocity. Browse the "e2tree alternatives" section above for the current picks, or visit /alternatives/e2tree for the full list with editorial commentary on each.
What are the best alternatives to rphylopic?
Top rphylopic alternatives in Analytics are ranked by recent ship velocity. Browse the "rphylopic alternatives" section above for the current picks, or visit /alternatives/rphylopic for the full list with editorial commentary on each.