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EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
Comparison · Analytics
dggridR vs qtl
A side-by-side editorial comparison of dggridR and qtl — release velocity, themes, recent moves, and the top alternatives to consider.
dggridR vs qtl: at a glance
What is dggridR?
A discrete global grid generator grew cell traversal and became a usable spatial index.
dggridR builds discrete global grids — icosahedral tessellations of the Earth into equal-area hexagonal or triangular cells — by wrapping the DGGRID C++ engine. The 4.1.0 release adds dgneighbors, dgchildren and dgparent for moving between adjacent cells and across resolutions, plus dgpoints_to_cells and dgbin_points for mapping and aggregating point data into cells. New aperture 7 and mixed-aperture ISEA43H grid types arrive alongside them.
What is qtl?
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
dggridR vs qtl: editorial side-by-side
dggridR
0.0ANALYTICS
A discrete global grid generator grew cell traversal and became a usable spatial index.
◆ Current state
dggridR builds discrete global grids — icosahedral tessellations of the Earth into equal-area hexagonal or triangular cells — by wrapping the DGGRID C++ engine. The 4.1.0 release adds dgneighbors, dgchildren and dgparent for moving between adjacent cells and across resolutions, plus dgpoints_to_cells and dgbin_points for mapping and aggregating point data into cells. New aperture 7 and mixed-aperture ISEA43H grid types arrive alongside them.
◆ Where it's heading
The package changed hands in effect as well as in code: the 4.0.0 engine update to DGGRID v9.0b and the first real test suite were contributed by Sebastian Krantz, who also maintains the upstream engine fork, and 4.1.0's feature burst followed two weeks later. The direction of that burst is unmistakable — away from generating grids for plotting and toward using them as an indexing structure that point data gets binned into and navigated through.
◆ Prediction
Expect the cell hierarchy functions to extend to non-hexagonal apertures and multi-level traversal, closing the remaining gaps against established global indexing systems.
qtl
0.0ANALYTICS
R/qtl is in pure custodial mode: every recent release answers a compiler, not a user
◆ Current state
R/qtl is the long-established R package for QTL mapping in experimental crosses, covering interval mapping, composite interval mapping, multiple-QTL model fitting and the associated cross data formats. Nothing in the recent release history adds capability. Version 1.74 removes an include that started warning on CRAN, 1.72 improves an error message in cim(), and 1.70 migrates the C code from Calloc/Realloc/Free to their R_-prefixed equivalents for R-devel.
◆ Where it's heading
The package is being maintained, not developed. The work divides cleanly into keeping the compiled code building against successive R and toolchain versions, and fixing narrow bugs reported through the issue tracker. The C-level migrations in particular are compliance with R's tightening of its C interface rather than anything chosen. Users should read the stability as maturity: the analysis surface has been fixed for years and the maintainer is keeping it installable.
◆ Prediction
R has continued to restrict its non-API C entry points, and this package has already made two such migrations, so further compile-time compliance work is the most likely content of the next release.
Alternatives to dggridR and qtl
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either dggridR or qtl.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
Recent activity from dggridR and qtl
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 3mo agodggridRCell neighbors, parents and children make the grid navigable ⚡
- 3mo agodggridRBundled DGGRID engine updated to v9.0b with a test suite
- 3mo agodggridRMaster merged into development ahead of the 4.0 work
- 8mo agoqtlRemove R_ext/PrtUtil.h include flagged by CRAN
- 8mo agoqtlClearer cim() error when multiple phenotypes are passed
- 1y agoqtlC memory calls migrated to R_Calloc/R_Realloc/R_Free
- 2y agoqtlFix Rprintf call and remaining compiler warnings
- 2y agoqtlFix summary.scanone() thresholds and csvs phenotype reading
- 3y agoqtlFix addint()/addcovarint() with X chromosome QTL and missing phenotypes
Frequently asked questions
What is the difference between dggridR and qtl?
They serve adjacent needs but don't currently overlap on shipped themes. dggridR and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is dggridR better than qtl?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. dggridR and qtl are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to dggridR?
Top dggridR alternatives in Analytics are ranked by recent ship velocity. Browse the "dggridR alternatives" section above for the current picks, or visit /alternatives/dggridr for the full list with editorial commentary on each.
What are the best alternatives to qtl?
Top qtl alternatives in Analytics are ranked by recent ship velocity. Browse the "qtl alternatives" section above for the current picks, or visit /alternatives/qtl-r for the full list with editorial commentary on each.