phyloatlas
An atlas of the tree of life that keeps publishing what it got wrong, and stopped shipping the trees it does not own.
A side-by-side editorial comparison of cvms and eratosthenes — release velocity, themes, recent moves, and the top alternatives to consider.
A cross-validation package whose real development has moved to its plotting function
cvms runs repeated cross-validation over model formulas and reports comparable metrics. The 2.0.0 release was a breaking correctness fix: every function accepting fold_cols mismatched training and testing data when fold indices were non-sequential, did not start at 1, or were strings, because the iteration index was compared against the raw fold value rather than its factor level index. 2.0.1 restored coefficient extraction for nnet::multinom and mixed models by supplying an environment containing the training data, and followed lme4's move of findbars() into the reformulas package.
eratosthenes spends 0.1.0 hardening inputs rather than adding chronology methods.
eratosthenes does Bayesian estimation of archaeological chronologies from relative sequences, absolute constraints and artifact assemblages. The 0.0.9 line built out the inference diagnostics — traceplots, histograms, batch-means MCSE reporting, displacement estimation — and then consolidated artifact probability-density estimation into a single gibbs_ad_type(). The 0.1.0 tag turns outward instead, adding validators for every user-supplied structure and replacing seq_check() with a more informative seq_diag().
cvms runs repeated cross-validation over model formulas and reports comparable metrics. The 2.0.0 release was a breaking correctness fix: every function accepting fold_cols mismatched training and testing data when fold indices were non-sequential, did not start at 1, or were strings, because the iteration index was compared against the raw fold value rather than its factor level index. 2.0.1 restored coefficient extraction for nnet::multinom and mixed models by supplying an environment containing the training data, and followed lme4's move of findbars() into the reformulas package.
Two threads run in parallel and only one is about cross-validation. The plotting function plot_confusion_matrix() has absorbed most feature work since 1.5.0 - custom gradient palettes, intensity limits, per-tile settings, dynamic font colors keyed to value thresholds, and arguments that accept functions rather than constants - to the point where a companion web application exists for using it without code. The cross-validation core, by contrast, sees maintenance: upstream compatibility fixes for pROC, ggnewscale and ggplot2, and the fold-matching correction that finally forced a major version.
Expect continued option growth in the confusion matrix plotting surface, since that is where nearly every release since 1.5.0 has spent its changes, with core cross-validation changes arriving only as upstream packages force them.
eratosthenes does Bayesian estimation of archaeological chronologies from relative sequences, absolute constraints and artifact assemblages. The 0.0.9 line built out the inference diagnostics — traceplots, histograms, batch-means MCSE reporting, displacement estimation — and then consolidated artifact probability-density estimation into a single gibbs_ad_type(). The 0.1.0 tag turns outward instead, adding validators for every user-supplied structure and replacing seq_check() with a more informative seq_diag().
The package is moving from research code to something a non-author can run. Consolidating estimation behind one function, then wrapping every input class in a validator, are the two steps that make failures legible instead of cryptic, and the diagnostics added earlier serve the same end for the sampler itself. Nothing in the window changes the underlying model; the work is all about making it usable and its output checkable.
With inputs validated and diagnostics in place, the next release is more likely to extend the constraint or assemblage modelling than to keep reworking the interface, though the feed's three sparse tags give little to read a cadence from.
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cvms or eratosthenes.
An atlas of the tree of life that keeps publishing what it got wrong, and stopped shipping the trees it does not own.
Land-change analysis in R that has spent six years defending one download link.
The machine-learning arm of a forecast reconciliation toolkit, four months old and already sharing its sibling's plumbing.
Forecast reconciliation with a real object model, five years after it started returning bare matrices.
A textbook data package whose whole job is to stay installable, and whose releases prove how much work that is.
A graph-centrality package that spent 2026 making its existing measures usable at scale, then went quiet.
See all cvms alternatives → · See all eratosthenes alternatives →
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
Both compete on the same themes — r-package — within Infra & APIs. eratosthenes is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. eratosthenes is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
Top cvms alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "cvms alternatives" section above for the current picks, or visit /alternatives/cvms for the full list with editorial commentary on each.
Top eratosthenes alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "eratosthenes alternatives" section above for the current picks, or visit /alternatives/eratosthenes for the full list with editorial commentary on each.