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cfrnow vs qqman

A side-by-side editorial comparison of cfrnow and qqman — release velocity, themes, recent moves, and the top alternatives to consider.

cfrnow vs qqman: at a glance

Featurecfrnowqqman
SectorAnalyticsAnalytics
Velocity score5.00.0
Sparks · 30d00
Top themesepidemiology, bayesian-modelling, cfr-estimation, r-packagegwas, genomics, manhattan-plot, visualization
Last editorial update12h ago1h ago
WebsiteVisit →Visit →

What is cfrnow?

A Bayesian real-time CFR estimator that now ships stratified fits and posterior-predictive checks

cfrnow estimates case fatality ratios from line-list data while an outbreak is still running, using a Bayesian mixture-cure survival model registered as an `epidist` model type. Three releases in a month took it from first public release to stratified, partially-pooled fits with posterior-predictive checking. It leans on `distspec` for delay parameterisation, which reached CRAN alongside the 0.2.1 patch.

Read the full cfrnow trajectory →

What is qqman?

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

Read the full qqman trajectory →

cfrnow vs qqman: editorial side-by-side

C
cfrnow
ANALYTICS
5.0

A Bayesian real-time CFR estimator that now ships stratified fits and posterior-predictive checks

◆ Current state

cfrnow estimates case fatality ratios from line-list data while an outbreak is still running, using a Bayesian mixture-cure survival model registered as an `epidist` model type. Three releases in a month took it from first public release to stratified, partially-pooled fits with posterior-predictive checking. It leans on `distspec` for delay parameterisation, which reached CRAN alongside the 0.2.1 patch.

◆ Where it's heading

The arc runs from producing a single corrected CFR number toward supporting a full model-checking workflow. 0.2.0 added the pieces a modeller needs to defend an estimate: replicate line lists replayed through the real-time truncation, an ascertainment-ratio correction for when fatal and non-fatal cases enter the line list at different rates, and per-group CFRs from `brms` formulas. Delay coverage widened from LogNormal and Gamma to Weibull in the same release.

◆ Prediction

Expect the next release to keep widening covariate and pooling support rather than adding new outcome types, since every 0.2.0 addition extended the existing formula interface instead of replacing it.

Q
qqman
ANALYTICS
0.0

The Manhattan-plot package for GWAS results, finished and dormant since 2017.

◆ Current state

qqman does two things: manhattan() and qq() plots for genome-wide association study results. Its six visible releases run from 2014 to a single 2017 packaging fix, and the last release with any user-facing change shipped in 2015. The archive is non-monotonic — a 0.0.0 tag published after 0.1.1 archives the pre-package standalone script — so version order and publication order disagree.

◆ Where it's heading

The real development window was 2014 to 2015. The 0.1.2 release did the substantive work, replacing the assumption that SNPs are evenly distributed across chromosomes and handing users control of axis limits, labels and log transformation; 0.1.3 then added annotation by p-value threshold and top-SNP-per-chromosome. After that the package stops. Notably, the archival 0.0.0 entry records that the original script had confidence intervals on QQ plots and richer highlighting than the released package ever regained.

◆ Prediction

With one packaging fix in the last decade, these entries support no prediction of further releases. The package reads as complete for its narrow purpose rather than abandoned mid-arc.

Alternatives to cfrnow and qqman

Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either cfrnow or qqman.

See all cfrnow alternatives → · See all qqman alternatives →

Recent activity from cfrnow and qqman

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 5d agocfrnowdistspec dependency moves to CRAN
  2. 6d agocfrnowStratified CFR fits, Weibull delays, posterior-predictive checks
  3. 1mo agocfrnowFirst release: real-time CFR from a Bayesian mixture-cure model
  4. 9y agoqqmanREADME image path fix for pandoc
  5. 11y agoqqmanAnnotate SNPs by p-value threshold or per-chromosome top hit
  6. 11y agoqqmanChromosome ticks stop assuming even SNP spacing; axis control opens up
  7. 12y agoqqmanArchival tag for the pre-package standalone script
  8. 12y agoqqmanVignette touch-up
  9. 12y agoqqmanZenodo archival tag, no code change

Frequently asked questions

What is the difference between cfrnow and qqman?

They serve adjacent needs but don't currently overlap on shipped themes. cfrnow is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is cfrnow better than qqman?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. cfrnow is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.

What are the best alternatives to cfrnow?

Top cfrnow alternatives in Analytics are ranked by recent ship velocity. Browse the "cfrnow alternatives" section above for the current picks, or visit /alternatives/cfrnow for the full list with editorial commentary on each.

What are the best alternatives to qqman?

Top qqman alternatives in Analytics are ranked by recent ship velocity. Browse the "qqman alternatives" section above for the current picks, or visit /alternatives/qqman-r for the full list with editorial commentary on each.