EvoPhylo
EvoPhylo added BEAST2 alongside MrBayes, then went quiet for two years.
Comparison · Analytics
broman vs lineup2
A side-by-side editorial comparison of broman and lineup2 — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
broman vs lineup2: at a glance
What is broman?
A statistician's personal toolbox, growing one plotting utility at a time
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
What is lineup2?
lineup2 ships once every few years, and 2026's release is a logo and a core-count tweak.
lineup2 provides distance-based tools for detecting sample mix-ups between related datasets — comparing rows and columns of two matrices to find swapped or mislabeled samples. Its visible history is four releases spread across six years, and the capability surface has barely moved since plot_sample() and the propdiff distance arrived in 0.4. Version 0.8 in July 2026 adds a package logo and redefines cores=0 to mean all-but-one core.
broman vs lineup2: editorial side-by-side
broman
0.0ANALYTICS
A statistician's personal toolbox, growing one plotting utility at a time
◆ Current state
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
◆ Where it's heading
The additions cluster around two themes: time-axis plotting and running-window summaries, both of which have been extended across several releases. Nothing here is planned in the usual sense — functions appear when the author needs them and bugs are fixed when they surface downstream, as jiggle() did through dotplot(). The C-level cleanup in 0.92 matches the same change made to R/qtl the same week, which is what maintaining a set of packages under one author looks like.
◆ Prediction
Both recent function additions extend existing families rather than starting new ones, so the next release is most likely another variant in the running-window or time-plotting group, or a fix surfaced by one of the author's other packages.
lineup2
0.0ANALYTICS
lineup2 ships once every few years, and 2026's release is a logo and a core-count tweak.
◆ Current state
lineup2 provides distance-based tools for detecting sample mix-ups between related datasets — comparing rows and columns of two matrices to find swapped or mislabeled samples. Its visible history is four releases spread across six years, and the capability surface has barely moved since plot_sample() and the propdiff distance arrived in 0.4. Version 0.8 in July 2026 adds a package logo and redefines cores=0 to mean all-but-one core.
◆ Where it's heading
This is a finished, single-purpose package in maintenance. The substantive changes across the whole window are plotting conveniences and one parallelism default; nothing in the entries points at new distance measures, new input formats, or expanded scope. The release cadence — five years between 0.6 and 0.8 — reads as a tool the author considers done.
◆ Prediction
Further releases are likely to stay small: a plotting option, a parallelism detail, or a check-farm fix. The entries give no signal of planned feature work.
Alternatives to broman and lineup2
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either broman or lineup2.
treespace
treespace ships once every year or two, and only when CRAN or a user forces it.
Rpath
Rpath 1.1.0 learns to read Ecopath's own files, easing migration off the desktop tool.
TAF
TAF keeps turning ICES stock assessments into reproducible, dependency-pinned projects.
parallelDist
parallelDist is in pure preservation mode — one build fix every few years.
cairo
Cairo finally catches R's graphics engine, all the way to GE API 16.
See all broman alternatives → · See all lineup2 alternatives →
Recent activity from broman and lineup2
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agolineup2cores=0 now leaves one core free
- 8mo agobromanRemove R_ext/PrtUtil.h include flagged by CRAN
- 10mo agobromanFix exact-name matching in crayons()
- 11mo agobromanFix jiggle() with factors missing levels
- 1y agobromanrunningratio2() uses an adaptive window
- 2y agobromantimeplot() added; running functions accept NAs
- 2y agobromantime_axis() added for date-time axis labels
- 5y agolineup2plot_sample() gains xlim and ylim control
- 5y agolineup2plot_sample() and the propdiff distance added
- 5y agolineup2Package description revised for CRAN resubmission
Frequently asked questions
What is the difference between broman and lineup2?
Both compete on the same themes — r-package — within Analytics. broman and lineup2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is broman better than lineup2?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. broman and lineup2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to broman?
Top broman alternatives in Analytics are ranked by recent ship velocity. Browse the "broman alternatives" section above for the current picks, or visit /alternatives/broman-r for the full list with editorial commentary on each.
What are the best alternatives to lineup2?
Top lineup2 alternatives in Analytics are ranked by recent ship velocity. Browse the "lineup2 alternatives" section above for the current picks, or visit /alternatives/lineup2-r for the full list with editorial commentary on each.