paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
A side-by-side editorial comparison of broman and parallelDist — release velocity, themes, recent moves, and the top alternatives to consider.
A statistician's personal toolbox, growing one plotting utility at a time
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
parallelDist is in pure preservation mode — one build fix every few years.
parallelDist computes distance matrices across threads in C++ via RcppParallel and Armadillo. The feature set has been settled since 0.2.3 in 2018, which added hamming distance and cosine similarity; everything after that is compatibility work. The most recent release, 0.2.7, exists only to drop a C++11 pin that newer Armadillo versions no longer tolerate.
broman is Karl Broman's collection of personal R utilities — base-graphics plotting helpers such as grayplot, dotplot and timeplot, running-window summaries, and assorted conveniences. Recent releases alternate between small additions, like runningratio2() with an adaptive window sized to hit a target denominator, and narrow bug fixes in crayons() and jiggle(). Version 0.92 removes an include that had begun warning on CRAN.
The additions cluster around two themes: time-axis plotting and running-window summaries, both of which have been extended across several releases. Nothing here is planned in the usual sense — functions appear when the author needs them and bugs are fixed when they surface downstream, as jiggle() did through dotplot(). The C-level cleanup in 0.92 matches the same change made to R/qtl the same week, which is what maintaining a set of packages under one author looks like.
Both recent function additions extend existing families rather than starting new ones, so the next release is most likely another variant in the running-window or time-plotting group, or a fix surfaced by one of the author's other packages.
parallelDist computes distance matrices across threads in C++ via RcppParallel and Armadillo. The feature set has been settled since 0.2.3 in 2018, which added hamming distance and cosine similarity; everything after that is compatibility work. The most recent release, 0.2.7, exists only to drop a C++11 pin that newer Armadillo versions no longer tolerate.
The package is being kept installable, not developed. The three most recent releases are a toolchain pin removal, a DESCRIPTION field removal, and a coercion change inherited from proxy — none originate from user-facing intent. Gaps of three to four years between releases are the norm now, and each one is triggered by something upstream breaking rather than by a roadmap.
The next release will almost certainly be another compatibility fix timed to whatever Armadillo, Rcpp or CRAN check policy changes next. Nothing in the entries points to new distance measures or API work.
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either broman or parallelDist.
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors keeps making uncertainty print the way each scientific field expects.
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls has not changed its statistics since 2016 — only its website, twice.
grex is a lookup table with a version number — it ships when the annotation moves.
See all broman alternatives → · See all parallelDist alternatives →
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
They serve adjacent needs but don't currently overlap on shipped themes. broman and parallelDist are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. broman and parallelDist are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
Top broman alternatives in Analytics are ranked by recent ship velocity. Browse the "broman alternatives" section above for the current picks, or visit /alternatives/broman-r for the full list with editorial commentary on each.
Top parallelDist alternatives in Analytics are ranked by recent ship velocity. Browse the "parallelDist alternatives" section above for the current picks, or visit /alternatives/paralleldist for the full list with editorial commentary on each.