paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
broadcast vs protr
A side-by-side editorial comparison of broadcast and protr — release velocity, themes, recent moves, and the top alternatives to consider.
broadcast vs protr: at a glance
What is broadcast?
broadcast is filling in NumPy-style array broadcasting for R, operator by operator.
broadcast brings dimension-broadcasting semantics to R arrays and lists — elementwise operations between arrays of mismatched shape, plus casting methods between hierarchical lists and dimensional structures. It reached CRAN in September 2025 and has released roughly monthly since, accumulating operators (nor, nand, longest common substring), casting methods (cast_shallow2atomic, cast_hier2dim, hiernames2dimnames), and helpers (vector2array, undim, mbroadcasters).
What is protr?
protr's feature set is finished; the work now is surviving Bioconductor's churn.
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
broadcast vs protr: editorial side-by-side
broadcast
0.0ANALYTICS
broadcast is filling in NumPy-style array broadcasting for R, operator by operator.
◆ Current state
broadcast brings dimension-broadcasting semantics to R arrays and lists — elementwise operations between arrays of mismatched shape, plus casting methods between hierarchical lists and dimensional structures. It reached CRAN in September 2025 and has released roughly monthly since, accumulating operators (nor, nand, longest common substring), casting methods (cast_shallow2atomic, cast_hier2dim, hiernames2dimnames), and helpers (vector2array, undim, mbroadcasters).
◆ Where it's heading
The package is in its post-launch consolidation year, and the release notes read accordingly: roughly half of each entry is a consistency correction rather than an addition. Zero-length results now carry the right type, comparison operators accept integer and logical inputs, the comment attribute survives operations, and the nand operator was found to be wrongly defined against C++ short-circuit evaluation. That ratio is what a young package looks like while its edge cases are being found.
◆ Prediction
Expect more operators and casting methods on the same cadence, with continued type-consistency corrections as users exercise unusual input combinations. Nothing in the entries points at an architectural change.
protr
0.0ANALYTICS
protr's feature set is finished; the work now is surviving Bioconductor's churn.
◆ Current state
protr generates numerical descriptors from protein sequences for machine learning, plus alignment-based similarity between sequences. The descriptor functions have been stable for years. Recent releases divide cleanly into two kinds: extending the similarity computations to work under memory constraints, and absorbing the Bioconductor split that moved pairwise alignment out of Biostrings into pwalign.
◆ Where it's heading
The similarity side is where the remaining engineering goes, and it follows a consistent pattern — whatever parSeqSim() gained, crossSetSim() eventually gets. Batching, verbose progress and a disk-backed variant all arrived for the single-set case first and were mirrored for the cross-set case in 1.7-1. That is a maintainer closing feature-parity gaps rather than opening new directions, and the two most recent releases contain no user-facing change at all.
◆ Prediction
Expect the next release to react to another Bioconductor or R CMD check change, which accounts for three of the last four. The similarity functions now have parity, so there is no obvious internal backlog left.
Alternatives to broadcast and protr
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either broadcast or protr.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all broadcast alternatives → · See all protr alternatives →
Recent activity from broadcast and protr
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agobroadcastnor and longest-common-substring operators added; nand corrected
- 5mo agobroadcastcheckNULL, checkNA and ecumprob added
- 8mo agobroadcastZero-length results and attribute preservation made consistent
- 9mo agobroadcastacast dimnames bug fixed; casting and helper surface widens
- 10mo agobroadcastrecurse_classed replaced by recurse_all in casting methods
- 11mo agobroadcastTitle case fixed for CRAN submission
- 11mo agoprotrprotr 1.7-5 silences a Debian r-devel check note
- 1y agoprotrprotr 1.7-4 checks alignment dependencies upfront
- 1y agoprotrprotr 1.7-3 detects Biostrings version to find pwalign
- 2y agoprotrprotr 1.7-2 fixes citation key and vignette accessibility
- 2y agoprotrprotr 1.7-1 brings crossSetSim to parity with parSeqSim
- 2y agoprotrprotr 1.7-0 adds crossSetSim for two-set similarity
Frequently asked questions
What is the difference between broadcast and protr?
They serve adjacent needs but don't currently overlap on shipped themes. broadcast and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is broadcast better than protr?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. broadcast and protr are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to broadcast?
Top broadcast alternatives in Analytics are ranked by recent ship velocity. Browse the "broadcast alternatives" section above for the current picks, or visit /alternatives/broadcast-r for the full list with editorial commentary on each.
What are the best alternatives to protr?
Top protr alternatives in Analytics are ranked by recent ship velocity. Browse the "protr alternatives" section above for the current picks, or visit /alternatives/protr-r for the full list with editorial commentary on each.