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sivirep

ANALYTICS
Velocity0.0

Data Wrangling and Automated Reports from SIVIGILA source

epiverse-trace.github.io/sivirep ↗

sivirep turned Colombia's SIVIGILA surveillance data into a one-call reporting package.

epidemiologysurveillancecolombiar-reportingpublic-health
◆Current state
The 1.0.0 release of December 2024 is the substance of this feed: incidence calculation and plotting for the country, departments and municipalities, ethnicity and case-classification breakdowns, multi-year retrospectives, and a Reporte Evento template that assembles them. It was shaped by usability testing and expert review with Colombia's National Institute of Health. The two patches since are fixes, warnings and documentation.
◆Where it's heading
Work after 1.0.0 has gone into making the report template survive bad input rather than adding analyses — warnings when a municipality or department has no data, handlers that surface import and geo-filter errors during rendering, and an explicit note that first use of any import function needs an internet connection. English-language articles were added alongside the Spanish function interface.
◆Prediction
Spanish-named functions paired with new English articles point at a widening audience; more translation of the guides looks likelier than new epidemiological methods.

◆Recent moves

  1. 1y ago

    Report-template error handling and English articles

    A patch focused on resilience and documentation: warnings when geo_filtro finds no data for a municipality or department, error handlers in the report skeleton, an internet-connection note on import functions, and English introductions to the custom-analysis workflow.

    View source ↗
  2. 1y ago

    Locale tag fix and smaller CRAN examples

    Housekeeping published alongside 1.0.0: a corrected es-ES locale tag, examples guarded with if (interactive()) to keep the CRAN package small, and the report template renamed to Reporte Evento.

    View source ↗
  3. 1y ago

    Incidence, ethnicity and geographic analysis for SIVIGILA data

    ⚡ SPARK

    The release that defines the package: incidence calculation and plotting at national, departmental and municipal level, ethnicity and case-classification breakdowns, multi-year retrospectives, and five new sections in the report template. Everything since has been maintenance on this surface.

    View source ↗