paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
treespace vs vellum
A side-by-side editorial comparison of treespace and vellum — release velocity, themes, recent moves, and the top alternatives to consider.
treespace vs vellum: at a glance
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
What is vellum?
vellum's bugs are now found by using it, not testing it — the downstream grammar is doing the QA.
The rendering engine shipped nine releases in the two weeks around the end of July, six of them on a single day. Almost every entry is a correctness fix in a capability that worked when drawn and failed when measured, or worked in isolation and failed in composition. The release notes are unusually forensic: each one states the mechanism, the observable symptom, and why the fix mirrors the draw path rather than reimplementing it.
treespace vs vellum: editorial side-by-side
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
vellum
5.0ANALYTICS
vellum's bugs are now found by using it, not testing it — the downstream grammar is doing the QA.
◆ Current state
The rendering engine shipped nine releases in the two weeks around the end of July, six of them on a single day. Almost every entry is a correctness fix in a capability that worked when drawn and failed when measured, or worked in isolation and failed in composition. The release notes are unusually forensic: each one states the mechanism, the observable symptom, and why the fix mirrors the draw path rather than reimplementing it.
◆ Where it's heading
The pivotal detail is stated outright in 0.6.3 — the first bug in the series found by using the engine from vellumplot rather than testing it in isolation. Every release since names the downstream as the source: the contrast rule's false positives, the lint rules that fired on all five sample plots, the keyed roundrect batch. A rendering engine with a real grammar built on top of it is now getting the integration coverage that unit tests structurally cannot provide, and the fixes are converging on one theme: the measurement path and the draw path must not drift.
◆ Prediction
Expect the release rate to fall as the vellumplot integration surface is exhausted, with remaining work concentrated in the lint rule set now that it is meant to gate builds rather than just inform.
Alternatives to treespace and vellum
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either treespace or vellum.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all treespace alternatives → · See all vellum alternatives →
Recent activity from treespace and vellum
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 11d agovellumLinter grows to 20 rules and stops firing on every plot
- 13d agovellumAnimated SVGs no longer blink once and vanish or play in reverse
- 14d agovellumPick table now reports device pixels instead of two coordinate systems
- 15d agovellumContrast rule stops flagging every plot; gridlines become PDF artifacts
- 15d agovellumgrobwidth and grobheight now measure wrapped text, not the unwrapped line
- 15d agovellumKeyed roundrect becomes a real batch after downstream integration exposes it
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between treespace and vellum?
They serve adjacent needs but don't currently overlap on shipped themes. vellum is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is treespace better than vellum?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. vellum is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.
What are the best alternatives to vellum?
Top vellum alternatives in Analytics are ranked by recent ship velocity. Browse the "vellum alternatives" section above for the current picks, or visit /alternatives/vellum-r for the full list with editorial commentary on each.