tidytlg
A tables-listings-graphs package that reached CRAN and then went quiet.
Comparison · Analytics
Tplyr vs webchem
A side-by-side editorial comparison of Tplyr and webchem — release velocity, themes, recent moves, and the top alternatives to consider.
Tplyr vs webchem: at a glance
What is Tplyr?
Tplyr made clinical summary tables explain where every number came from.
Tplyr builds clinical summary tables through a layered grammar — count, descriptive statistics, and shift layers assembled onto a table object. The 1.0.0 release added a traceability metadata framework that lets a user ask which source rows produced any given cell, and later releases extended it to cases the first pass missed. The package is maintained by Atorus within the pharmaverse ecosystem.
What is webchem?
Adding chemical databases with one hand while public ones close programmatic access with the other.
webchem is the R interface to public chemical data — retrieving identifiers, properties and structures across roughly a dozen web services. Its release history reads as a running account of which of those services still allow automated access. Version 1.3.0 removed two functions outright because their sources withdrew: ChemIDplus was retired by the NLM, and PAN stopped supporting programmatic access. Version 1.3.1 continues the pattern, updating URLs that stopped working and noting that ChemSpider InChIKey validation now requires an API key like the rest of that provider's endpoints.
Tplyr vs webchem: editorial side-by-side
Tplyr
0.0ANALYTICS
Tplyr made clinical summary tables explain where every number came from.
◆ Current state
Tplyr builds clinical summary tables through a layered grammar — count, descriptive statistics, and shift layers assembled onto a table object. The 1.0.0 release added a traceability metadata framework that lets a user ask which source rows produced any given cell, and later releases extended it to cases the first pass missed. The package is maintained by Atorus within the pharmaverse ecosystem.
◆ Where it's heading
Post-1.0 work has been about completing the metadata story and filling gaps in layer composition rather than adding table types — metadata for missing subjects, add_anti_join(), missing-subject rows, data limiting, and fixes to nested count layers where an inner value appears under several outer groups. Releases cluster tightly after a major version, then go quiet, and the window ends with a patch issued days after the release it corrects.
◆ Prediction
Further releases will most likely continue closing traceability and nested-layer edge cases rather than introducing new layer types, following the pattern of both post-1.0 feature releases.
webchem
0.0ANALYTICS
Adding chemical databases with one hand while public ones close programmatic access with the other.
◆ Current state
webchem is the R interface to public chemical data — retrieving identifiers, properties and structures across roughly a dozen web services. Its release history reads as a running account of which of those services still allow automated access. Version 1.3.0 removed two functions outright because their sources withdrew: ChemIDplus was retired by the NLM, and PAN stopped supporting programmatic access. Version 1.3.1 continues the pattern, updating URLs that stopped working and noting that ChemSpider InChIKey validation now requires an API key like the rest of that provider's endpoints.
◆ Where it's heading
Two opposing forces run through these entries. The package keeps widening its coverage — ChEMBL in 1.2.0, LIPID MAPS and SwissLipids identifiers via Wikidata, structure images, Mol export — while the open, unauthenticated end of the chemical web keeps contracting. The other consistent thread is interface harmonisation: successive releases have converged the get_* functions on the same query and from arguments, tibble returns, and CAS reformatting, so the package feels like one interface rather than a dozen wrappers.
◆ Prediction
Expect further defunct functions and URL repairs as more providers move behind keys or shut down, alongside occasional additions of sources that remain open. The entries show no sign of a general credential-management layer, which is what a package facing this trend would eventually need.
Alternatives to Tplyr and webchem
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either Tplyr or webchem.
rlistings
Clinical listings that keep inheriting their hardest problem — pagination — from the layer below.
hoardr
A cache-directory helper that has shipped nothing but CRAN-triggered patches for seven years.
gigs
gigs redesigned its whole conversion API for rOpenSci, then spent three releases getting the docs to build.
riem
A weather-data client that keeps rewriting its HTTP layer while slowly tightening its API.
datasetjson
datasetjson rebuilt its object model to track the CDISC Dataset-JSON 1.1 schema.
See all Tplyr alternatives → · See all webchem alternatives →
Recent activity from Tplyr and webchem
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1y agowebchemRepairs broken URLs; ChemSpider check now needs a key
- 2y agoTplyrMissing-subject metadata, add_anti_join(), and nested-layer fixes
- 3y agowebchemChemIDplus and PAN queries removed as sources shut down ⚡
- 3y agoTplyrMetadata vignette fix and parenthesis hugging
- 3y agoTplyrDenominator logic fix ahead of CRAN release
- 3y agowebchemAdds ChEMBL access for bioactive compound data
- 3y agoTplyrReverse-dependency fix
- 3y agoTplyr1.0.0 introduces the traceability metadata framework ⚡
- 4y agowebchemcir_query() returns a tibble, a breaking change
- 4y agowebchemAdds Mol structure export; aw_query renamed to bcpc_query
- 5y agowebchemFetches LIPID MAPS and SwissLipids identifiers from Wikidata
Frequently asked questions
What is the difference between Tplyr and webchem?
They serve adjacent needs but don't currently overlap on shipped themes. Tplyr and webchem are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is Tplyr better than webchem?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. Tplyr and webchem are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to Tplyr?
Top Tplyr alternatives in Analytics are ranked by recent ship velocity. Browse the "Tplyr alternatives" section above for the current picks, or visit /alternatives/tplyr for the full list with editorial commentary on each.
What are the best alternatives to webchem?
Top webchem alternatives in Analytics are ranked by recent ship velocity. Browse the "webchem alternatives" section above for the current picks, or visit /alternatives/webchem for the full list with editorial commentary on each.