paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
tidytab vs treespace
A side-by-side editorial comparison of tidytab and treespace — release velocity, themes, recent moves, and the top alternatives to consider.
tidytab vs treespace: at a glance
What is tidytab?
A young tabulation helper whose first releases are all dependency modernisation
tidytab is a small R package for tidyverse-style tabulation, three releases into its public life. Nothing so far has added functionality: 0.2.0 fixed a cumulative-percentage calculation and moved to the base R pipe, and 0.3.0 swapped a retired purrr function for tidyr::expand_grid. The one substantive user-facing item in the history is the cumulative percentage fix.
What is treespace?
treespace ships once every year or two, and only when CRAN or a user forces it.
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
tidytab vs treespace: editorial side-by-side
tidytab
0.0ANALYTICS
A young tabulation helper whose first releases are all dependency modernisation
◆ Current state
tidytab is a small R package for tidyverse-style tabulation, three releases into its public life. Nothing so far has added functionality: 0.2.0 fixed a cumulative-percentage calculation and moved to the base R pipe, and 0.3.0 swapped a retired purrr function for tidyr::expand_grid. The one substantive user-facing item in the history is the cumulative percentage fix.
◆ Where it's heading
The package is being brought up to current tidyverse conventions by a wave of first-time contributors — six of them in 0.2.0 alone — rather than developed by a sustained maintainer effort. That makes the near-term direction predictable and narrow: retire deprecated idioms, keep CRAN checks clean. There is not yet enough history to say what the package intends to become.
◆ Prediction
With deprecated tidyselect and purrr usage now cleared, the remaining work of this kind is thin, so the next release will show whether the contributor interest converts into new tabulation features or the package settles at its current surface.
treespace
0.0ANALYTICS
treespace ships once every year or two, and only when CRAN or a user forces it.
◆ Current state
treespace explores and compares sets of phylogenetic and transmission trees, including the tree-distance measures used in outbreak reconstruction. Its release history is entirely reactive: five updates across five years, each triggered by a CRAN policy change, an upstream package removal, or a bug someone reported. The most recent is an Rd cross-reference format patch plus a maintainer email change.
◆ Where it's heading
The package is stable and lightly staffed rather than abandoned — bugs that affect correctness do get fixed, and CRAN deadlines are met. But the 2023 update is the telling one: rather than vendor or replace adephylo when it faced removal, the maintainers disabled two tree-vector methods and marked the loss as hopefully temporary. Two years on, nothing in the feed indicates they came back.
◆ Prediction
The next entry will most likely be another CRAN-compliance patch, on the pattern of four of the last five releases. Whether the Abouheif and sumDD methods ever return is not something these entries give any signal on.
Alternatives to tidytab and treespace
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either tidytab or treespace.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
See all tidytab alternatives → · See all treespace alternatives →
Recent activity from tidytab and treespace
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 7mo agotidytabpurrr::cross2() replaced with tidyr::expand_grid()
- 8mo agotidytabCumulative percentage fixed; base pipe replaces magrittr
- 9mo agotidytabNEWS.md added to track changes
- 11mo agotreespacetreespace patches Rd cross-references for CRAN
- 2y agotreespacetreespace disables Abouheif and sumDD as adephylo exits CRAN
- 3y agotreespacetreespace fixes vignette build on NA tree names
- 5y agotreespacetreespace fixes dist indexing that broke its tests
- 5y agotreespacetreespace corrects tip label handling in transmission distances
Frequently asked questions
What is the difference between tidytab and treespace?
They serve adjacent needs but don't currently overlap on shipped themes. tidytab and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is tidytab better than treespace?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. tidytab and treespace are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to tidytab?
Top tidytab alternatives in Analytics are ranked by recent ship velocity. Browse the "tidytab alternatives" section above for the current picks, or visit /alternatives/tidytab-r for the full list with editorial commentary on each.
What are the best alternatives to treespace?
Top treespace alternatives in Analytics are ranked by recent ship velocity. Browse the "treespace alternatives" section above for the current picks, or visit /alternatives/treespace-r for the full list with editorial commentary on each.