paleobuddy
paleobuddy can now simulate trait-dependent diversification, not just birth-death.
Comparison · Analytics
SimInf vs xts
A side-by-side editorial comparison of SimInf and xts — release velocity, themes, recent moves, and the top alternatives to consider.
SimInf vs xts: at a glance
What is SimInf?
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
What is xts?
xts is finished software, and its releases now track R's C API more than user requests.
xts is the time-series class underpinning much of R's financial stack, and it behaves like infrastructure: the visible releases are bug fixes, plotting repairs and conformance work. A recurring thread is removing calls R no longer considers public — SET_TYPEOF in 0.14.0 and 0.14.1, then ATTRIB() and SET_ATTRIB() in 0.14.2. Feature additions are rare and small, the last cluster being open-ended time-of-day subsetting and na.fill performance in 0.13.0.
SimInf vs xts: editorial side-by-side
SimInf
0.0ANALYTICS
SimInf 10.0 turns an epidemic simulator into a tool that fits models to real time series
◆ Current state
SimInf simulates stochastic disease spread over networks of nodes, with a model parser that compiles user-specified transitions to C. Version 10.0.0 was a deliberate major break: the SimInf_pfilter S4 class and the bootstrap filtering interface were redesigned, a replicates slot was added to SimInf_model, a multi-particle variant of the split-step solver arrived, and the package gained Particle Markov Chain Monte Carlo fitting against observed time series. The follow-up 10.1.0 is a single zero-length memcpy fix found by CRAN's M1 checks.
◆ Where it's heading
The package has been moving from simulation toward inference for several releases. The 9.x line built the input side — utilities for cleaning raw individual event data, variables and enumeration constants in the model parser — and 10.0.0 closed the loop by making the simulator fittable to data through PMCMC. The version number was incremented precisely because that required breaking the particle filter interface.
◆ Prediction
Fitting machinery this new usually needs a second pass on usability, so the next releases most likely focus on diagnostics and documentation around PMCMC rather than on the simulation core, which has been stable across the whole 9.x and 10.x history.
xts
0.0ANALYTICS
xts is finished software, and its releases now track R's C API more than user requests.
◆ Current state
xts is the time-series class underpinning much of R's financial stack, and it behaves like infrastructure: the visible releases are bug fixes, plotting repairs and conformance work. A recurring thread is removing calls R no longer considers public — SET_TYPEOF in 0.14.0 and 0.14.1, then ATTRIB() and SET_ATTRIB() in 0.14.2. Feature additions are rare and small, the last cluster being open-ended time-of-day subsetting and na.fill performance in 0.13.0.
◆ Where it's heading
Two forces drive releases. R core keeps narrowing its public C API, and xts keeps rewriting internals to stay inside it; separately, ggplot-era changes elsewhere in the ecosystem surface plotting bugs that get fixed one report at a time. Nearly every entry credits an outside reporter, which is what maintenance of a dependency this widely used looks like.
◆ Prediction
Further C API conformance work is the safest expectation, since two consecutive releases have each removed a different non-API entry point and R has continued tightening that boundary.
Alternatives to SimInf and xts
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either SimInf or xts.
geodist
geodist stays dependency-free and fast, and warns you when 'cheap' distances stop being honest.
errors
errors keeps making uncertainty print the way each scientific field expects.
CMAQ
CMAQ went global in v5.5, and has been patching that surface ever since.
enpls
enpls has not changed its statistics since 2016 — only its website, twice.
grex
grex is a lookup table with a version number — it ships when the annotation moves.
Recent activity from SimInf and xts
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agoxtsmulti.panel plots beyond 8 columns; SET_TYPEOF removed from C
- 5mo agoxtsATTRIB removed from C; rollapply.xts accepts vector widths
- 9mo agoSimInfAvoid memcpy on zero-length continuous state vector
- 9mo agoSimInfPMCMC fitting arrives; particle filter interface redesigned ⚡
- 2y agoSimInfDocumentation link anchors; parser dependency fix
- 2y agoxtsMulti-panel event lines; first SET_TYPEOF replacement
- 2y agoxtstclass changes now alter index values; log-scale y-axis added
- 2y agoSimInfModel parser gains variables and enumeration constants
- 2y agoSimInfindividual_events() added for raw event data cleaning
- 3y agoxtsUpdate path for pre-0.12 objects missing index attributes
- 3y agoxtsOpen-ended time-of-day subsetting; fast scalar na.fill
- 3y agoSimInfConfigure script uses R to locate the compiler
Frequently asked questions
What is the difference between SimInf and xts?
They serve adjacent needs but don't currently overlap on shipped themes. SimInf and xts are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is SimInf better than xts?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. SimInf and xts are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to SimInf?
Top SimInf alternatives in Analytics are ranked by recent ship velocity. Browse the "SimInf alternatives" section above for the current picks, or visit /alternatives/siminf-r for the full list with editorial commentary on each.
What are the best alternatives to xts?
Top xts alternatives in Analytics are ranked by recent ship velocity. Browse the "xts alternatives" section above for the current picks, or visit /alternatives/xts-r for the full list with editorial commentary on each.